Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,308,660 – 7,308,753 |
Length | 93 |
Max. P | 0.677603 |
Location | 7,308,660 – 7,308,753 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 92.90 |
Mean single sequence MFE | -28.09 |
Consensus MFE | -21.41 |
Energy contribution | -21.61 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.09 |
Mean z-score | -1.82 |
Structure conservation index | 0.76 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677603 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7308660 93 + 22224390 UGAUUUAGCCGAAAUGAUGAAACGAAAGCCCAUGAAGGCUUAAGUGUCAGGCACACAUGAGCGUUGGGAAUGGGGUUUC-CUUUUU-CCAUGGCU ......((((...(((..((((.((((.(((((.((.(((((.((((.....)))).))))).))....))))).))))-.)))).-.))))))) ( -30.00) >DroSec_CAF1 58383 93 + 1 UGAUUUAGCUGAAAUGAUGAAACGAAAGCCCAUGAAGGCUUAAGUGUCAGGCACACAUGAGCGUUGGGAAUGGGGUUUC-CUUUUU-CCAUGGCA .......(((...(((..((((.((((.(((((.((.(((((.((((.....)))).))))).))....))))).))))-.)))).-.)))))). ( -28.40) >DroSim_CAF1 58025 93 + 1 UGAUUUAGCUGAAAUGAUGAAACGAAAGCCCAUGAAGGCUUAAGUGUCAGGCACACAUGAGCGUUGGGAAUGGGGUUUC-CUUUUU-CCAUGGCA .......(((...(((..((((.((((.(((((.((.(((((.((((.....)))).))))).))....))))).))))-.)))).-.)))))). ( -28.40) >DroEre_CAF1 68869 89 + 1 UGAUUUAGCCGAAAUGAUGAAACGAAAGCCCAUGAAGGCUUAAGUGUCAGGCACACAUGAGCGUUGGGAAUGGGCUUUUCCUUUUUCCU------ ...............((.(((..((((((((((.((.(((((.((((.....)))).))))).))....))))))))))..))).))..------ ( -25.50) >DroYak_CAF1 86190 95 + 1 UGAUUUAGCCCAAAUGAUGAAACGAAAGCCCAUGAAGGCUUAAGUGUCAGGCACACAUGAGCGUUGGGAAUGGGGUUUUCCUUUUUGCCACGGCA .......(((........((((.((((((((.(.((.(((((.((((.....)))).))))).)).).....)))))))).))))......))). ( -28.14) >consensus UGAUUUAGCCGAAAUGAUGAAACGAAAGCCCAUGAAGGCUUAAGUGUCAGGCACACAUGAGCGUUGGGAAUGGGGUUUC_CUUUUU_CCAUGGCA .......(((.............((((.(((((.((.(((((.((((.....)))).))))).))....))))).))))............))). (-21.41 = -21.61 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:51 2006