Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,307,024 – 7,307,121 |
Length | 97 |
Max. P | 0.703302 |
Location | 7,307,024 – 7,307,121 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 82.78 |
Mean single sequence MFE | -23.93 |
Consensus MFE | -17.57 |
Energy contribution | -17.16 |
Covariance contribution | -0.42 |
Combinations/Pair | 1.23 |
Mean z-score | -1.88 |
Structure conservation index | 0.73 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.703302 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7307024 97 + 22224390 UACA--------CCCCCUGUCAG------GUAUUUCAUAUCAUUUCAAUAUCAUUGAUGUCAAAAUGCUGCUCGCCCUGCUAAUGUGCAC-AUCGCAGAGCAAAGACAAAAA ....--------.....((((.(------((((((.((((((............))))))..)))))))((((((..(((......))).-...)).))))...)))).... ( -22.10) >DroVir_CAF1 81314 103 + 1 CACA--------CCCC-AGCCAGGUACGAGUAUUUCAUGUCAUUUCAAUAUCAUUGAUGUAAAAAUGUUCCGCGCUCUGUUAAUGUGCGCCAAAGCGGGGCAGAAACAACAA ....--------((((-.((..(((..((((((((.((((((............))))))..)))))))).((((.........)))))))...))))))............ ( -21.40) >DroPse_CAF1 89776 105 + 1 GACCCCGUCCGUCCAUCCGUCAG------GUAUUUCAUAUCAUUUCAAUAUCAUUGAUGUAAAAAUGCUGUUCGCUCUGUUAAUGUGCGC-AACGCGGGGCAAAGACAAAAC (.((((((..............(------((((((.((((((............))))))..)))))))((((((.(.......).))).-))))))))))........... ( -24.60) >DroEre_CAF1 67258 97 + 1 UACA--------CCCCCUGUCAG------GUAUUUCAUAUCAUUUCAAUAUCAUUGAUGUCAAAAUGCUGCUCGCUCUGCUAAUGUGCAC-AUCGCAGAGCAAAGACAAAAA ....--------.....((((.(------((((((.((((((............))))))..)))))))....(((((((..(((....)-)).)))))))...)))).... ( -25.80) >DroYak_CAF1 84484 97 + 1 UACA--------CCCCCUGUCAG------GUAUUUCAUAUCAUUUCAAUAUCAUUGAUGUCAAAAUGCUGCUCGCUCUGCUAAUGUGCAC-AUCGCGGAGCAAAGACAAAAA ....--------.....((((.(------((((((.((((((............))))))..)))))))....(((((((..(((....)-)).)))))))...)))).... ( -25.10) >DroPer_CAF1 118867 105 + 1 GACCCCGUCCGUCCAUCCGUCAG------GUAUUUCAUAUCAUUUCAAUAUCAUUGAUGUAAAAAUGCUGUUCGCUCUGUUAAUGUGCGC-AACGCGGGGCAAAGACAAAAC (.((((((..............(------((((((.((((((............))))))..)))))))((((((.(.......).))).-))))))))))........... ( -24.60) >consensus UACA________CCCCCUGUCAG______GUAUUUCAUAUCAUUUCAAUAUCAUUGAUGUAAAAAUGCUGCUCGCUCUGCUAAUGUGCAC_AACGCGGAGCAAAGACAAAAA ..................(((........((((((.((((((............))))))..)))))).....(((((((..............)))))))...)))..... (-17.57 = -17.16 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:50 2006