Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,306,580 – 7,306,670 |
Length | 90 |
Max. P | 0.815402 |
Location | 7,306,580 – 7,306,670 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 78.48 |
Mean single sequence MFE | -29.27 |
Consensus MFE | -15.25 |
Energy contribution | -16.92 |
Covariance contribution | 1.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.17 |
Structure conservation index | 0.52 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.815402 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7306580 90 + 22224390 -------CC--AGUUUCCCAUUUUCCA---ACCAUACCCUGACCUGGCUGCCUGUCCAGCUGUCAGGGCAUAUUAUUGGUGUGCGGAAAAUGUUCGCGUAAU -------..--.((....((((((((.---.......((((((..(((((......)))))))))))((((((.....))))))))))))))...))..... ( -31.40) >DroPse_CAF1 89219 86 + 1 -------CUCUACCGUCC--CUUUCCGGAGGCCAUCUCC-------GCCGCCUGUCCAGCUGUCAGGGCAUAUUAUUGGUGUGCGGAAAAUGUUCGCGUAAU -------...(((((..(--.(((((((((.....))))-------(((((((((((........))))).......)))).)))))))..)..)).))).. ( -26.11) >DroEre_CAF1 66803 97 + 1 CAGUUUCCC--AGUUUCCCAUUUUCCA---GCCAUACCCUGACCUGGAUGCCUGUCCAGCUGUCAGGGCAUAUUAUUGGUGUGCGGAAAAUGCUCGCGUAAU .........--.((....((((((((.---.......((((((((((((....))))))..))))))((((((.....))))))))))))))...))..... ( -33.30) >DroYak_CAF1 83983 97 + 1 CAGUUUCCC--AGUUUCCCAUUUCCCA---ACCAUACCCUGACCUGGCUGCCUGUCCAGCUGUCAGGGCAUAUUAUUGGUGUGCGGAAAAUGUUCGCGUAAU ..((....(--(.((((((((...(((---(..((((((((((..(((((......))))))))))))..)))..)))).))).))))).))...))..... ( -29.20) >DroAna_CAF1 63177 84 + 1 -------CC--AAUUUCUCACAU--CA---GGUAUCCCCUGGCC----CGCCUGUCCAGCUGUCAGGGCAUAUUAUUGGUGUGCGGAAAAUGUUCGCGUAAU -------.(--(.((((((((((--((---(((((.(((((((.----.((.......)).))))))).))))..)))))))).))))).)).......... ( -27.30) >DroPer_CAF1 118298 86 + 1 -------CUCUACCGUCC--UUUUCCGGAGGCCAUCUCC-------GCCGCCUGUCCAGCUGUCAGGGCAUAUUAUUGGUGUGCGGAAAAUGUUCGCGUAAU -------...(((((..(--((((((((((.....))))-------(((((((((((........))))).......)))).)))))))).)..)).))).. ( -28.31) >consensus _______CC__AGUUUCCCAUUUUCCA___GCCAUACCCUGACC__GCCGCCUGUCCAGCUGUCAGGGCAUAUUAUUGGUGUGCGGAAAAUGUUCGCGUAAU ..................((((((((........................((((.(.....).))))((((((.....)))))))))))))).......... (-15.25 = -16.92 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:49 2006