Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 916,059 – 916,154 |
Length | 95 |
Max. P | 0.877642 |
Location | 916,059 – 916,154 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 75.39 |
Mean single sequence MFE | -24.13 |
Consensus MFE | -15.45 |
Energy contribution | -15.07 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.17 |
Mean z-score | -1.58 |
Structure conservation index | 0.64 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.877642 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 916059 95 - 22224390 --------CGCCCCUCAGCUCCUGGAGCGUGACCACCUCUGA------CCGGAGCUAUUUUUGCAUACUUUAGUGCGACGCGCAAACAAUUUGCAUUUUCCAUUUUCCA --------.((.....(((((((((((.((....))))))).------..))))))....((((((......)))))).))((((.....))))............... ( -23.60) >DroPse_CAF1 25455 84 - 1 ------------------CUCGACGCGAGAGACCACCUCCACGUGGAUGUGGAGCUAUUUUUGCAUGCUUUUGUGCAACGCGCAAACAAUUUGCAUUUU-------CCA ------------------...(.((((((((.((((.(((....))).)))).((.......))...))))))))).....((((.....)))).....-------... ( -23.40) >DroSec_CAF1 7532 103 - 1 ACGCUGCACGCCCCUCAGCUCCUGGAGCGUGACCACCUCUGA------CCGGAGCUAUUUUUGCAUACUUUUGUGCGACGCGCAAACAAUUUGCAUUUUCCAUUUUCCA .....((.........(((((((((((.((....))))))).------..))))))....(((((((....))))))).))((((.....))))............... ( -24.70) >DroEre_CAF1 8725 103 - 1 UCGCUACACGCCCCGCAUCUCCGGGAGCGUGACCACCUCUGA------CCGGAGCUAUUUUUGCAUACUUUUGUGCGACGCGCAAACAAUUUGCAUUUUCCAUUUUCCA ..((..(((((((((......)))).))))).....((((..------..))))......(((((((....))))))).))((((.....))))............... ( -28.80) >DroYak_CAF1 8141 97 - 1 ------CACGUCCCUCAUCUCCUGGAGCGUGACCACCUCUGA------CCGGAGCUAUUUUUGCAUACUUUUGUGAGACGCGCAAACAAUUUGCAUUUUCCAUUUUCCA ------((((..((.........))..))))...........------..(((((...(((..((......))..))).))((((.....))))....)))........ ( -20.90) >DroPer_CAF1 27332 84 - 1 ------------------CUCGACGCGAGAGACCACCUCCACGUGGAUGUGGAGCUAUUUUUGCAUGCUUUUGUGCAACGCGCAAACAAUUUGCAUUUU-------CCA ------------------...(.((((((((.((((.(((....))).)))).((.......))...))))))))).....((((.....)))).....-------... ( -23.40) >consensus ________CGCCCCUCA_CUCCUGGAGCGUGACCACCUCUGA______CCGGAGCUAUUUUUGCAUACUUUUGUGCGACGCGCAAACAAUUUGCAUUUUCCAUUUUCCA ..........................(((.......(((((........)))))......((((((......)))))))))((((.....))))............... (-15.45 = -15.07 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:33 2006