Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,295,105 – 7,295,197 |
Length | 92 |
Max. P | 0.957992 |
Location | 7,295,105 – 7,295,197 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.89 |
Mean single sequence MFE | -24.48 |
Consensus MFE | -15.23 |
Energy contribution | -14.87 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.10 |
Mean z-score | -2.28 |
Structure conservation index | 0.62 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957992 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7295105 92 - 22224390 -------------ACCACAGUUGGCAAUGCGUAAAAGUGUUAACCAAAAGCAGUUAAAAUUACAAAAGGCAGAGUGCCAUGGCAAUGGCAACCAGGCCACCGAAA--------------- -------------.......((((......((((.....(((((........)))))..))))....(((....((((((....)))))).....))).))))..--------------- ( -20.90) >DroPse_CAF1 75300 106 - 1 -------------GCAGCAGUUGGCAAUGCGUAAAAGUGUUAACCAAAAGCAGUUAAAAUUACAAAAGGCAGAGUGCCAUGGCAAUGGCAA-CAGGCCACCAAAUGGCACACCCGACUCU -------------..((.((((((...(((((((.....(((((........)))))..))))....(((....((((((....)))))).-...)))........)))...)))))))) ( -29.40) >DroEre_CAF1 55456 91 - 1 -------------ACCACAGUUGGCAAUGCGUAAAAGUGUUAACCAAAAGCAGUUAAAAUUACAAAAGGCAGAGUGCCAUGGCAAUGGCAGCCAGGCCACCGAA---------------- -------------......(.((((.....((((.....(((((........)))))..))))....(((....((((((....)))))))))..)))).)...---------------- ( -22.10) >DroWil_CAF1 53270 110 - 1 CCCCCUUGAAGAAAAAACAGUUGGCAAUGCGUAAAAGUGUUAACCAAAAGCAGUUAAAAUUAUAAAAGGCACAACGCCAUGGCAAUGGCAA-CAGGCCACGAAAUGGCAAA--------- ...................((((.((.(((....((.((((.......)))).))............(((.....)))...))).)).)))-)..((((.....))))...--------- ( -23.30) >DroAna_CAF1 48963 81 - 1 -------------ACCACAGUUGGCAAUGCGUAAAAGUGUUAACCGAAAGUAGUUAAAAUUACAAAAGGCAGAGCGCCAUGGCAAUGCCAG-----------AAA--------------- -------------.......((((((.(((((((.....((((((....)..)))))..))))....(((.....)))...))).))))))-----------...--------------- ( -21.90) >DroPer_CAF1 102991 106 - 1 -------------GUAGCAGUUGGCAAUGCGUAAAAGUGUUAACCAAAAGCAGUUAAAAUUACAAAAGGCAGAGUGCCAUGGCAAUGGCAA-CAGGCCACCAAAUGGCACACCCGACUCU -------------..((.((((((...(((((((.....(((((........)))))..))))....(((....((((((....)))))).-...)))........)))...)))))))) ( -29.30) >consensus _____________ACAACAGUUGGCAAUGCGUAAAAGUGUUAACCAAAAGCAGUUAAAAUUACAAAAGGCAGAGUGCCAUGGCAAUGGCAA_CAGGCCACCAAAU_______________ ....................(((.((.(((((((.....(((((........)))))..))))....(((.....)))...))).)).)))............................. (-15.23 = -14.87 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:42 2006