Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,280,863 – 7,280,983 |
Length | 120 |
Max. P | 0.974988 |
Location | 7,280,863 – 7,280,983 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.44 |
Mean single sequence MFE | -22.57 |
Consensus MFE | -22.57 |
Energy contribution | -22.57 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.16 |
Structure conservation index | 1.00 |
SVM decision value | 1.74 |
SVM RNA-class probability | 0.974988 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7280863 120 + 22224390 AUUUCUCAUAUUUUUAAUUUCUGCACUUUGUCCCUAUUUAUCCUGGCGUUGGCAGUUUUUAAUUUCUCUGCUUUUCCGGUGCAAAGUUAAUGAAUAAUUGUGCGCACUUUUGCGGCAAAC ........((((((((((((.((((((..(((............)))...(((((............))))).....))))))))))))).))))).((((.((((....)))))))).. ( -22.70) >DroEre_CAF1 40320 120 + 1 AUUUCUCAUAUUUUUAAUUUCUGCACUUUGUCCCUAUUUAUCCUGGCGUUGGCAGUUUUUAAUUUCUCUGCUUUUCCGGUGCAAAGUUAAUGAAUAAUUGUGCGCACUUUUGCGGCAAAC ........((((((((((((.((((((..(((............)))...(((((............))))).....))))))))))))).))))).((((.((((....)))))))).. ( -22.70) >DroWil_CAF1 39150 120 + 1 AUUUCUCAUAUUUUUAAUUUCUGCACUUUGUCCCUAUUUAUCCUGGCGUUGGCAGUUUUUAAUUUCUCUGCUUUUCCGGUGCAAAGUUAAUGAAUAAUUGUGCGCACUUUUGCGGCAAAC ........((((((((((((.((((((..(((............)))...(((((............))))).....))))))))))))).))))).((((.((((....)))))))).. ( -22.70) >DroYak_CAF1 56727 120 + 1 AUUUCUCAUAUUUUUAAUUUCUGCACUUUGUCCCUAUUUAUCCUGGCGUUGGCAGUUUUUAAUUUCUCUGCUUUUCCGGUGCAAAGUUAAUGAAUAAUUGUGCGCACUUUUGCGGCAAAC ........((((((((((((.((((((..(((............)))...(((((............))))).....))))))))))))).))))).((((.((((....)))))))).. ( -22.70) >DroMoj_CAF1 49151 120 + 1 AUUUCUCAUAUUUUUAAUUUCUGCACUUUGUCCCUAUUUAUCCUGGCGUUGGCAGUUUUUAAUUUCUCUGCUUUUCCGGUGCAAAGUUAAUGAAUAAUUGUGCGCACUUUUGCGGCAAAC ........((((((((((((.((((((..(((............)))...(((((............))))).....))))))))))))).))))).((((.((((....)))))))).. ( -22.70) >DroAna_CAF1 37314 118 + 1 AUUUCUCAUAUUUUUAAUUUCUGCACUUUGUCCCUAUUUAUCCUGGCGUUGGCAGUUUUUAAUUUCUCUGCUUUUCCGGUGCAAAGUUAAUGAAUAAUUGUGCGCACUUUUGCGGCAA-- ........((((((((((((.((((((..(((............)))...(((((............))))).....))))))))))))).))))).((((.((((....))))))))-- ( -21.90) >consensus AUUUCUCAUAUUUUUAAUUUCUGCACUUUGUCCCUAUUUAUCCUGGCGUUGGCAGUUUUUAAUUUCUCUGCUUUUCCGGUGCAAAGUUAAUGAAUAAUUGUGCGCACUUUUGCGGCAAAC ........((((((((((((.((((((..(((............)))...(((((............))))).....))))))))))))).))))).((((.((((....)))))))).. (-22.57 = -22.57 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:34 2006