Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,276,692 – 7,276,826 |
Length | 134 |
Max. P | 0.973215 |
Location | 7,276,692 – 7,276,804 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.49 |
Mean single sequence MFE | -22.28 |
Consensus MFE | -19.07 |
Energy contribution | -18.93 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.04 |
Mean z-score | -1.58 |
Structure conservation index | 0.86 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611394 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7276692 112 + 22224390 -------AGACAAUUGUCAAUUGCAUAUCCUUUUCGCAUUAAUAUUUCAUUAACAACAUUUGUGCGGAAGUUUGAUCUUCUGCAUCAAUGGCUUGUAAAAUUGACUUGG-CCCAACACAA -------...(((..(((((((((...........))...............(((.((((.(((((((((......))))))))).))))...)))..)))))))))).-.......... ( -23.80) >DroVir_CAF1 39930 108 + 1 -------AGACAAUUGUCAAUUGCAUAUCCUUUUCGCAUUAAUAUUUCAUUAACAACAUUU--GCGGAAGUUUGAUCUUCUGCAUCAAUGGUUUGUAAAAUUGACUUGGGCCCAACA--- -------........(((((((..(((..(........(((((.....)))))...(((((--(((((((......))))))))..)))))..)))..)))))))(((....)))..--- ( -20.50) >DroPse_CAF1 54623 105 + 1 -------AGACAAUUGUCAAUUGCAUAUCCUUUUCGCAUUAAUAUUUCAUUAACAACAUUUG-GCGGAAGUUUGAUCUUCUGCAUCAAUGGUUUGUAAAAUUGACUUGC-UUCA------ -------.(((....)))....(((..((..(((..(((((((.....)))))...((((..-(((((((......)))))))...))))...))..)))..))..)))-....------ ( -22.10) >DroWil_CAF1 34219 113 + 1 CCAUCGUUGGCGAUUGUCAAUUGCAUAUCCUUUUCGCAUUAAUAUUUCAUUAACAACAUUU-UGCGGAAGUUUGAUCUUCUGCAUCAAUGGCUUGUAAAAUUGACUUGA-C--AACC--- .....((((.(((..(((((((((...........))...............(((.((((.-((((((((......))))))))..))))...)))..)))))))))).-)--))).--- ( -24.70) >DroMoj_CAF1 43650 108 + 1 -------AGACAAUUGUCAAUUGCAUAUCCUUUUCGCAUUAAUAUUUCAUUAACAACAUUU--GCGGAAGUUUGAUCUUCUGCAUCAAUGGUUUGUAAAAUUGACUUGGGCCCAACA--- -------........(((((((..(((..(........(((((.....)))))...(((((--(((((((......))))))))..)))))..)))..)))))))(((....)))..--- ( -20.50) >DroPer_CAF1 81629 105 + 1 -------AGACAAUUGUCAAUUGCAUAUCCUUUUCGCAUUAAUAUUUCAUUAACAACAUUUG-GCGGAAGUUUGAUCUUCUGCAUCAAUGGUUUGUAAAAUUGACUUGC-UUCA------ -------.(((....)))....(((..((..(((..(((((((.....)))))...((((..-(((((((......)))))))...))))...))..)))..))..)))-....------ ( -22.10) >consensus _______AGACAAUUGUCAAUUGCAUAUCCUUUUCGCAUUAAUAUUUCAUUAACAACAUUU__GCGGAAGUUUGAUCUUCUGCAUCAAUGGUUUGUAAAAUUGACUUGG_CCCAACA___ ..........(((..((((((((((...((........(((((.....)))))..........(((((((......)))))))......))..))))..)))))))))............ (-19.07 = -18.93 + -0.14)
Location | 7,276,725 – 7,276,826 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 78.01 |
Mean single sequence MFE | -19.48 |
Consensus MFE | -14.93 |
Energy contribution | -15.60 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.36 |
Structure conservation index | 0.77 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973215 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7276725 101 + 22224390 AAUAUUUCAUUAACAACAUUUGUGCGGAAGUUUGAUCUUCUGCAUCAAUGGCUUGUAAAAUUGACUUGG-CCCAACACAAAAAAAAAAAAAA---CCAACAGAAA------ ....((((........((((.(((((((((......))))))))).))))(((.((.......))..))-).....................---......))))------ ( -18.60) >DroGri_CAF1 35004 100 + 1 AAUAUUUCAUUAACAACAUUU--GCGGAAGUUUGAUCUUCUGCAUCAAUGGUUUGUAAAAUUGACUUGGGCCCAAGA---------GCAACAACAGCAACAACAGCAACAA ................(((((--(((((((......))))))))..))))..((((........((((....)))).---------((.......)).......))))... ( -19.10) >DroEre_CAF1 36038 83 + 1 AAUAUUUCAUUAACAACAUUUGUGCGGAAGUUUGAUCUUCUGCAUCAAUGGUUUGUAAAAUUGACUUGG-CCCAACA---------GCAAAA---A--------------- ......(((...(((.((((.(((((((((......))))))))).))))...))).....)))....(-(......---------))....---.--------------- ( -17.70) >DroWil_CAF1 34259 84 + 1 AAUAUUUCAUUAACAACAUUU-UGCGGAAGUUUGAUCUUCUGCAUCAAUGGCUUGUAAAAUUGACUUGA-C--AACC--------------C---ACAAGCCAAA------ .....................-((((((((......))))))))....((((((((....(((......-)--))..--------------.---))))))))..------ ( -22.10) >DroYak_CAF1 52034 83 + 1 AAUAUUUCAUUAACAACAUUUGUGCGGAAGUUUGAUCUUCUGCAUCAAUGGUUUGUAAAAUUGACUUGG-CCCAACA---------AAAAAA---A--------------- ......(((...(((.((((.(((((((((......))))))))).))))...))).....))).(((.-.....))---------).....---.--------------- ( -17.40) >DroAna_CAF1 33253 99 + 1 AAUAUUUCAUUAACAACAUUUG-GCGGAAGUUUGAUCUUCUGCAUCAAUGGUUUGUAAAAUUGACUUGG-CCCACCC-GGCCAAAAAAAACA---GCAACAACAA------ ......(((...(((.((((..-(((((((......)))))))...))))...))).....))).((((-((.....-))))))........---..........------ ( -22.00) >consensus AAUAUUUCAUUAACAACAUUUGUGCGGAAGUUUGAUCUUCUGCAUCAAUGGUUUGUAAAAUUGACUUGG_CCCAACA_________AAAAAA___ACAACA__AA______ ......(((...(((.((((.(((((((((......))))))))).))))...))).....)))............................................... (-14.93 = -15.60 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:33 2006