Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,275,012 – 7,275,105 |
Length | 93 |
Max. P | 0.549307 |
Location | 7,275,012 – 7,275,105 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 87.17 |
Mean single sequence MFE | -23.83 |
Consensus MFE | -16.58 |
Energy contribution | -17.32 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.52 |
Structure conservation index | 0.70 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549307 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7275012 93 + 22224390 UAAUUGAUUUGAAAUUGAUUAAUUAAGUCUCCCCCUCUUGGCUGCAACGUAAACGAUGACUGUGCCAUUGGGGU-GUACCGCUUUUAGGGCAAU (((((((((.......)))))))))......((((...((((.(((.((....)).)).)...))))..)))).-.....(((.....)))... ( -22.60) >DroSec_CAF1 24938 93 + 1 UAAUUGAUUUGAAAUUGAUUAAUUAAUUCUCCCCCUCUAGGCUGCAACGUAAACGAUGACUGUGCCAUUGGGGU-GUGCCGCCUUUUGGGCAAU (((((((((.......))))))))).......(((...((((.(((.......(((((.......)))))....-.))).))))...))).... ( -23.30) >DroSim_CAF1 24983 81 + 1 UAAUUGAUUUGAAAUUGAUUAAUUAAGUCUCCCCCUCUUGGCUGCAACGUAAACGAUGACUGUGCCAUUGGGGU-------------GGGCAAU (((((((((.......))))))))).(((..((((...((((.(((.((....)).)).)...))))..)))).-------------.)))... ( -26.70) >DroEre_CAF1 34368 94 + 1 UAAUUGAUUUGAAAUUGAUUAAUUAAGUCUCCCCCCCUUGGCAGCAACGUAAACGAUGACUGUGCCUUUUGGGCCAAGCCCCCUUUUGGGCAAU (((((((((.......))))))))).........(((..((((.((.((....)).))....))))....)))....((((......))))... ( -22.70) >consensus UAAUUGAUUUGAAAUUGAUUAAUUAAGUCUCCCCCUCUUGGCUGCAACGUAAACGAUGACUGUGCCAUUGGGGU_GUGCCGCCUUUUGGGCAAU (((((((((.......)))))))))......((((...((((.(((.((....)).)).)...))))..))))..................... (-16.58 = -17.32 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:31 2006