Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,264,001 – 7,264,207 |
Length | 206 |
Max. P | 0.768932 |
Location | 7,264,001 – 7,264,106 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 79.30 |
Mean single sequence MFE | -37.52 |
Consensus MFE | -25.49 |
Energy contribution | -24.13 |
Covariance contribution | -1.35 |
Combinations/Pair | 1.43 |
Mean z-score | -1.54 |
Structure conservation index | 0.68 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.768932 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7264001 105 + 22224390 AUGGCCGGAUUAUUUGGUCUUUUGCCUGAUGUUGGCCAUUUGCGCCGUUAUCGGUAUAUAUUUUUGCCUGCAACUGCGCUUAGAGUCCAGGAAACAAAAGGCCAA .((((((((((....((((..((((..((((.(((((....).)))).))))((((........)))).))))..).)))...))))).(....)....))))). ( -35.20) >DroVir_CAF1 22327 105 + 1 UUGGCCAGACUAUGUGGUCUUUUGUCUCAUGCUGGCCAUCUGCGCCGUCAUCGGCAUCUAUUUCUGCCUGCAGCUGCGUCGCGAGUCGAAGGAGGUGAAGGCCUC ..(((((((((....)))))((..((((.(((.(((.......((((....))))..........))).))).((.((.(....).)).))))))..)))))).. ( -36.63) >DroGri_CAF1 18935 105 + 1 CUGGCCGGACUAUCUGGUCUUUAGCCUCAUGCUGGCCAUUUGCGCCUUUAUCGGCAUCUACUUUUGCCUGCAGAUGCGCCGGGAGUCCAGACAGCUCAAGGCCAG ((((((.((((.(((((.(((((((.....)))(((((((((((........((((........)))))))))))).))).)))).))))).)).))..)))))) ( -44.30) >DroEre_CAF1 23690 105 + 1 AUGGCUGGACUACUUGGUCUUCUGCCUGAUGCUGGCCAUUUGCGCCGUGAUCGGGAUUUAUUUCUGCCUGCAACUGCGUGGCGAGUCCAGGAGGAAGAAGGCGCA (((((..(.(.....(((.....)))....))..))))).((((((....((.((((((......((((((....))).)))))))))..)).......)))))) ( -35.40) >DroYak_CAF1 38806 105 + 1 AUGGCCGGAUUAUGUGGUCUUUUGCCUGAUGUUGGCCAUUUGUGCUGUAAUUGGCAUUUACUUUUGCCUGCAACUGCGUGGCGAGUCCAGGAAAAAGAAGUCCUU ((((((((((((.(..(....)..).)))).))))))))..(((((......))))).....(((((((((....))).))))))...((((........)))). ( -30.00) >DroMoj_CAF1 22047 105 + 1 CUGGCCGGACUACGUGGUCUUCUGCCUCAUGCUGGCCAUCUGCGCCGUCAUCGGCAUCCACUUCUGCCUGCAGCUGCGCCGCGAGUCCCGCCAGCUGAAGGCCAC (((((.(((((.(((((((..((((...(((.(((((....).)))).))).((((........)))).))))..).))))))))))).)))))........... ( -43.60) >consensus AUGGCCGGACUAUGUGGUCUUUUGCCUCAUGCUGGCCAUUUGCGCCGUCAUCGGCAUCUACUUCUGCCUGCAACUGCGCCGCGAGUCCAGGAAGCAGAAGGCCAA ..(((((((((.(((((((....((.....)).))))....((((.((....((((........))))....)).)))).))))))))...........)))).. (-25.49 = -24.13 + -1.35)
Location | 7,264,041 – 7,264,146 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 77.30 |
Mean single sequence MFE | -43.87 |
Consensus MFE | -26.41 |
Energy contribution | -26.13 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.33 |
Mean z-score | -1.43 |
Structure conservation index | 0.60 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.572658 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7264041 105 + 22224390 UGCGCCGUUAUCGGUAUAUAUUUUUGCCUGCAACUGCGCUUAGAGUCCAGGAAACAAAAGGCCAA---UGGCUCAGAGGAGGCGGCGAGUAGUGCUGCCUCGUAUUUG .((((.(((...((((........))))...))).))))...(((((..((...(....).))..---.)))))....(((((((((.....)))))))))....... ( -35.40) >DroVir_CAF1 22367 105 + 1 UGCGCCGUCAUCGGCAUCUAUUUCUGCCUGCAGCUGCGUCGCGAGUCGAAGGAGGUGAAGGCCUC---CGGUGGCGAGGAGGCGGCCAAUAGCGCCGCCUCCUAUUUG .....(((((((((((........))))........((.(....).))..((((((....)))))---))))))))(((((((((((....).))))))))))..... ( -50.20) >DroEre_CAF1 23730 105 + 1 UGCGCCGUGAUCGGGAUUUAUUUCUGCCUGCAACUGCGUGGCGAGUCCAGGAGGAAGAAGGCGCA---UGGCGAAGAGGAGGCGGCGACUAGUGCUGCCUCAUAUUUG ((((((....((.((((((......((((((....))).)))))))))..)).......))))))---...((((...(((((((((.....)))))))))...)))) ( -41.30) >DroYak_CAF1 38846 105 + 1 UGUGCUGUAAUUGGCAUUUACUUUUGCCUGCAACUGCGUGGCGAGUCCAGGAAAAAGAAGUCCUU---CGGCGAAGAGGAGGCGGCCACUAGUGCUGCCUCGUAUUUG .(((((......)))))...(((((((((((....))).)))..(((.((((........)))).---.))).)))))(((((((((....).))))))))....... ( -35.40) >DroMoj_CAF1 22087 105 + 1 UGCGCCGUCAUCGGCAUCCACUUCUGCCUGCAGCUGCGCCGCGAGUCCCGCCAGCUGAAGGCCAC---CGGCGCCGAGGAGGCGGCCAGCAGCGCCGCCUCCUACCUG .((((((.....((...))......((((.((((((((.(....)...)).)))))).))))...---))))))..(((((((((((....).))))))))))..... ( -52.00) >DroPer_CAF1 67355 108 + 1 UGCGCCGUGAUUGGGGUCUACUUCUGCCUGCAGCUGCGUCGAGAGUCCCGCAAGCAGCGGGCCCACGGUGGCGCCGAGGAGGCGGCCAACAGUGCAGCCUCCUAUCUG ..(((((((...((((....)))).((((((.((((((.(....)...))).))).)))))).)))))))......(((((((.(((....).)).)))))))..... ( -48.90) >consensus UGCGCCGUCAUCGGCAUCUACUUCUGCCUGCAACUGCGUCGCGAGUCCAGGAAGCAGAAGGCCAA___CGGCGCAGAGGAGGCGGCCAAUAGUGCUGCCUCCUAUUUG .((((.((....((((........))))....)).)))).....................(((......)))......((((((((.......))))))))....... (-26.41 = -26.13 + -0.27)
Location | 7,264,106 – 7,264,207 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 80.59 |
Mean single sequence MFE | -36.62 |
Consensus MFE | -27.03 |
Energy contribution | -27.40 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.26 |
Mean z-score | -1.46 |
Structure conservation index | 0.74 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.722649 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7264106 101 + 22224390 UGGCUCAGAGGAGGCGGCGAGUAGUGCUGCCUCGUAUUUGGUUGGUGGCAGGCAGAUGAAGAUCUUUCCCAUAACCAUGUCACUGAUAUCCAGGUGAGGAA---- ...(((....(((((((((.....)))))))))..(((((((..((((((((...(((..((....)).)))..)).))))))..)...)))))))))...---- ( -36.00) >DroVir_CAF1 22432 105 + 1 CGGUGGCGAGGAGGCGGCCAAUAGCGCCGCCUCCUAUUUGGUCGGCGGCAGAAAAAUGAAAAUCUUUCCCAUUACCAUGUCGCUAAUCUCUAGGUGAGUACGAAA .((((((((((((((((((....).))))))))))...((((.(..((..((((.((....)).)))))).).)))))))))))...(((.....)))....... ( -37.40) >DroPse_CAF1 40897 105 + 1 UGGCGCCGAGGAGGCGGCCAACAGUGCAGCCUCCUAUCUAGUGGGCGGCAGGCAGAUGAAGAUAUUUCCCAUCACCAUGUCUCUGAUAUCGAGGUGGGUAUGAAU (((((((.....))).)))).((.(((.(((.(((((...))))).)))..)))..)).........((((((.(.(((((...))))).).))))))....... ( -35.60) >DroWil_CAF1 21575 101 + 1 CAGUGCAGAGGAGGCAGCUGAUAGUGCUGCAUCCUAUCUGGUGGGUGGCAGGCAAAUGAAAAUCUUUCCCAUUACCAUGUCGCUGAUAGCAAGGUGAGUUA---- (..(((..((((.(((((.......))))).)))).....((.(((((((((..((((...........)))).)).))))))).)).)))..).......---- ( -30.20) >DroMoj_CAF1 22152 105 + 1 CGGCGCCGAGGAGGCGGCCAGCAGCGCCGCCUCCUACCUGGUGGGCGGCAGGAAAAUGAAAAUCUUUCCCAUCACCAUGUCGCUUAUCUCGAGGUGAGUACAAAA ...((((.(((((((((((....).))))))))))....((((((((((((((((((....)).)))))........)))))))))))....))))......... ( -44.90) >DroPer_CAF1 67423 105 + 1 UGGCGCCGAGGAGGCGGCCAACAGUGCAGCCUCCUAUCUGGUGGGCGGCAGGCAGAUGAAGAUAUUUCCCAUCACCAUGUCUCUGAUAUCGAGGUGGGUAUGAAU (((((((.....))).)))).((.(((.(((.(((((...))))).)))..)))..)).........((((((.(.(((((...))))).).))))))....... ( -35.60) >consensus CGGCGCCGAGGAGGCGGCCAACAGUGCAGCCUCCUAUCUGGUGGGCGGCAGGCAAAUGAAAAUCUUUCCCAUCACCAUGUCGCUGAUAUCGAGGUGAGUAAGAA_ ........((((((((((.......))))))))))((((.((.(((((((....((((...........))))....))))))).))....)))).......... (-27.03 = -27.40 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:27 2006