Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,253,839 – 7,253,930 |
Length | 91 |
Max. P | 0.894008 |
Location | 7,253,839 – 7,253,930 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 80.30 |
Mean single sequence MFE | -24.57 |
Consensus MFE | -18.35 |
Energy contribution | -19.02 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.97 |
Structure conservation index | 0.75 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.894008 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7253839 91 + 22224390 C-------------CGGCGCUCAGGUGUCCUUAGUGGUGUUCUAAUUACUAACAAACUUAAUUUGCUACAAGUUAUUUUCUUGCGGACACCGCUUACU--C---GUACU-------- .-------------(((......(((((((((((((((......))))))))......(((((((...))))))).........)))))))......)--)---)....-------- ( -22.20) >DroPse_CAF1 28968 93 + 1 G-------------CUGUGCUCAGGUGUCCUUAGUGGUGUUCUAAUUACUAACAAACUUAAUUUGCUACAAGUUAUUUUCUUGCGGACACCGCUUGCCCUC---GCCUU-------- (-------------(.(.((...(((((((((((((((......))))))))......(((((((...))))))).........)))))))....)).)..---))...-------- ( -24.20) >DroEre_CAF1 9224 99 + 1 C-------------CGGCGCUCAGGUGUCCUUAGUGGUGUUCUAAUUACUAACAAACUUAAUUUGCUACAAGUUAUUUUCUUGCGGACACCGCUUACU--C---GUACUUCCACUAC .-------------(((......(((((((((((((((......))))))))......(((((((...))))))).........)))))))......)--)---)............ ( -22.20) >DroMoj_CAF1 8663 105 + 1 CGGGGCAGACAGAAGGACGCUCAGGUGUCCUUAGUGGUGUUCUAAUUACUAACAAACUUAAUUUCCUACAAGUUAUUUGCC----CAAACCCUCGACGCUCGCUGUGCG-------- ..(((((((...((((((((....))))))))((((((......)))))).........................))))))----)..........(((.......)))-------- ( -29.00) >DroAna_CAF1 6089 92 + 1 C------------CCGGCGCUCAGGUGUCCUUAGUGGUGUUCUAAUUACUAACAAACUUAAUUUGCUACAAGUUAUUUUCUUGCGGACACCGCUUACU--U---GUGCU-------- .------------..(((((...(((((((((((((((......))))))))......(((((((...))))))).........))))))).......--.---)))))-------- ( -25.60) >DroPer_CAF1 55340 93 + 1 G-------------CUGUGCUCAGGUGUCCUUAGUGGUGUUCUAAUUACUAACAAACUUAAUUUGCUACAAGUUAUUUUCUUGCGGACACCGCUUGCCCUC---GCCUU-------- (-------------(.(.((...(((((((((((((((......))))))))......(((((((...))))))).........)))))))....)).)..---))...-------- ( -24.20) >consensus C_____________CGGCGCUCAGGUGUCCUUAGUGGUGUUCUAAUUACUAACAAACUUAAUUUGCUACAAGUUAUUUUCUUGCGGACACCGCUUACU__C___GUACU________ .......................(((((((((((((((......))))))))......(((((((...))))))).........))))))).......................... (-18.35 = -19.02 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:22 2006