Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,249,711 – 7,249,810 |
Length | 99 |
Max. P | 0.621616 |
Location | 7,249,711 – 7,249,810 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.87 |
Mean single sequence MFE | -24.23 |
Consensus MFE | -18.05 |
Energy contribution | -17.63 |
Covariance contribution | -0.42 |
Combinations/Pair | 1.12 |
Mean z-score | -1.44 |
Structure conservation index | 0.74 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.621616 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7249711 99 - 22224390 ------GCUGCUGUCAAU-UCAGACGGAUUUGAAGUCAACUCAAUUUGAAAUCAAUAGUGUGUGAAUAAUCCUUUCACACCGACAC--------AUCGACGCACA----UGG--UUGGUG ------.....((((..(-(((((..((.(((....))).))..)))))).......(.(((((((.......))))))))))))(--------((((((.....----..)--)))))) ( -26.10) >DroPse_CAF1 25726 109 - 1 ACUGCUGCUGCUGUCAAU-UCAGACGGAUUUGAAGUCAACUCAAUUUGAAAUCAAUAGUGUGUGAAUAAUCCUUUCACACCAACGC--------UCCCACACACCCAUCUAG--UUGGAG ...((.(((((((((...-...)))))..((((..((((......))))..))))))))(((((((.......)))))))....))--------..........(((.....--.))).. ( -23.50) >DroEre_CAF1 6184 99 - 1 ------GCUGCUGUCAAU-UCAAACGGAUUUGAAGUCAACUCAAUUUGAAAUCAAUAGUGUGUGAAUAAUCCUUUCACACCGACAC--------ACCGACGCACA----UGG--UUGCUG ------(.((.((((..(-(((((..((.(((....))).))..)))))).......(.(((((((.......)))))))))))))--------).)...(((..----...--.))).. ( -22.70) >DroYak_CAF1 23563 110 - 1 ------UCUGCUGUCAAUUUCAGAUGGAUUUGAAGUCAACUCAAUUUGAAAUCAAUAGUGUGUGAAUAAUCCUUUCACACCGACACAUCGACACAUCGACGCACA----UGGCUUUGGUG ------...(((((..(((((((((.((.(((....))).)).)))))))))..)))))(((((((.......)))))))(((....)))...((((((.((...----..)).)))))) ( -29.90) >DroAna_CAF1 2898 93 - 1 --------UGCUGUCAAU-UUGGACGGAUUUGGAGUCAACUCAAUUUGAAAUCAAUAGUGUGUGAAUAAUCCUUUCACACCGACGC--------AUACACAGACA----CUC--UC---- --------(((.(((...-.......(((((.((((.......)))).)))))....(.(((((((.......)))))))))))))--------)..........----...--..---- ( -19.70) >DroPer_CAF1 51771 107 - 1 --UGCUGCUGCUGUCAAU-UCAGACGGAUUUGAAGUCAACUCAAUUUGAAAUCAAUAGUGUGUGAAUAAUCCUUUCACACCAACGC--------UCCCACACACCCAUCUAG--UUGGAG --.((.(((((((((...-...)))))..((((..((((......))))..))))))))(((((((.......)))))))....))--------..........(((.....--.))).. ( -23.50) >consensus ______GCUGCUGUCAAU_UCAGACGGAUUUGAAGUCAACUCAAUUUGAAAUCAAUAGUGUGUGAAUAAUCCUUUCACACCGACAC________ACCCACACACA____UGG__UUGGUG .........(((((..((.(((((..((.(((....))).))..))))).))..)))))(((((((.......)))))))........................................ (-18.05 = -17.63 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:17 2006