Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,245,073 – 7,245,164 |
Length | 91 |
Max. P | 0.931031 |
Location | 7,245,073 – 7,245,164 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 82.21 |
Mean single sequence MFE | -18.90 |
Consensus MFE | -18.32 |
Energy contribution | -18.10 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -0.71 |
Structure conservation index | 0.97 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.931031 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7245073 91 + 22224390 AAGGAAGUCGGAAGGGGCCAUUAAGUGAUGCCAAUGAUUAACAACGGAAGUAUAGAUUUGGCCUACGAGUCUGGAA---UAUUUUUUUUUUUUG- ((((((.(((((..((((((...(((.((....)).)))....((....)).......)))))).....)))))..---..)))))).......- ( -17.80) >DroEre_CAF1 1269 95 + 1 AAGGAAGUCGGAAGGGGCCAUUAAGUGAUGCCAAUGAUUAACAACGGAAGUAUAGAUUUGGCCUACGAGUCUGGAACUUUAUUUAUUUUUCUUGU (((((((((....))(((.(((....))))))..............(((((.((((((((.....))))))))..)))))......))))))).. ( -20.00) >DroYak_CAF1 18795 72 + 1 AAGGAAGUCGGAAGGGGCCAUUAAGUGAUGCCAAUGAUUAACAACGGAAGUAUAGAUUUGGCCCACGAGUCU----------------------- ..(((..(((....((((((...(((.((....)).)))....((....)).......)))))).))).)))----------------------- ( -18.90) >consensus AAGGAAGUCGGAAGGGGCCAUUAAGUGAUGCCAAUGAUUAACAACGGAAGUAUAGAUUUGGCCUACGAGUCUGGAA___UAUUU_UUUUU_UUG_ ..(((..(((....((((((...(((.((....)).)))....((....)).......)))))).))).)))....................... (-18.32 = -18.10 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:15 2006