Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,229,825 – 7,229,928 |
Length | 103 |
Max. P | 0.670087 |
Location | 7,229,825 – 7,229,928 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 73.44 |
Mean single sequence MFE | -31.18 |
Consensus MFE | -12.79 |
Energy contribution | -14.10 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.21 |
Mean z-score | -2.44 |
Structure conservation index | 0.41 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670087 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7229825 103 + 22224390 GGAAGUUUUUUGCAA---ACAGCG--AA--AAAUGGGAUGAGUAGGGCGGAGAGGG-AUAUAUUAUUUCCCCGGCCAGGUGAGUGCACUUGGCACUUGAGAAGGUAAUUAA ....(((((((((..---...)))--))--)))).....((((..((.(((((...-........))))))).((((((((....)))))))))))).............. ( -29.20) >DroVir_CAF1 33313 101 + 1 GCAAGUUUUUCGCUUUAGAUCGAGGCAGACGUCUCGAGGCAGGAGGUCGGUGAGGUGGCGUU----------GCUGGAGUGAGUGCACUUGGCACUGGGUUCGGUAAUUAG ((.(.(((.(((((((...(((((((....))))))).....)))).))).))).).))(((----------((((((.(.(((((.....))))).).)))))))))... ( -37.20) >DroSec_CAF1 6370 101 + 1 GGAAGUUUUUUGCAA---ACAGCG--AA--AAAUGGGAUGAGUAGGGAGGAGAGGG---AUAUUAUUUCCCCGGCCAGGUGAGUGCACUUGGCACUUGAGAAGGUAAUUAA ....(((((((((..---...)))--))--)))).....((((..((.(((((...---......))))))).((((((((....)))))))))))).............. ( -29.40) >DroSim_CAF1 6316 101 + 1 GGAAGUUUUUUGCAA---ACAGCG--AA--AAAUGGGAUGAGCAGGGAGGAGAGGU---AUAUUAUUUCCCCGGCCAGGUGAGUGCACUUGGCACUUGAGAAGGUAAUUAA ....(((((((((..---...)))--))--))))........((((..((.(((((---(...)))))).)).((((((((....)))))))).))))............. ( -28.90) >consensus GGAAGUUUUUUGCAA___ACAGCG__AA__AAAUGGGAUGAGUAGGGAGGAGAGGG___AUAUUAUUUCCCCGGCCAGGUGAGUGCACUUGGCACUUGAGAAGGUAAUUAA .............................................((.(((((............))))))).((((((((....))))))))((((....))))...... (-12.79 = -14.10 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:14 2006