| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 911,149 – 911,259 |
| Length | 110 |
| Max. P | 0.552331 |
| Location | 911,149 – 911,259 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 80.41 |
| Mean single sequence MFE | -24.66 |
| Consensus MFE | -14.20 |
| Energy contribution | -14.97 |
| Covariance contribution | 0.77 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.552331 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 911149 110 - 22224390 CGCACUCGACACCCCUUCC----AAUUUAUUUC---CACCCAAAACGAGAGGGGCCAAUAAUUUGGCCAAUGACGUGCAAUUAUUUGCCAGCCAACU-UUCCGUGGCCCUUAACCCCU .(((((((.....(((..(----..........---..........)..)))((((((....))))))..))).))))............((((...-.....))))........... ( -24.75) >DroPse_CAF1 15161 97 - 1 ------------UCCUUCUGGCUCGCUUAUCGCCGGCACCCCAU-CGA---GGGCCAAUAAUUUGGCCAAUGACGUGCAAUUAUUUGCCAGCCAACU-UU-UGAGCCCCU---CUCCU ------------.......(((((((.....)).(((......(-((.---.((((((....))))))..))).(.((((....))))).)))....-..-.)))))...---..... ( -30.40) >DroSec_CAF1 2754 109 - 1 --CACUCGACACCCCUUCC----AAUUUAUUUC---CACCCAAAACGAGAGGGGCCAAUAAUUUGGCCAAUGACGUGCAAUUAUUUGGCAGCCAACUUUUCUGUGGCCUUUAACCCCU --..((((...........----..........---.........))))(((((((((((((...(((......).)).)))).))))).((((.(......))))).......)))) ( -21.01) >DroSim_CAF1 2767 108 - 1 --CACUCGACACCCCUUCC----AGUUUAUUUC---CACCCAAAACGAGAGGGGCCAAUAAUUUGGCCAAUGACGUGCAAUUAUUUGCCAGCCAACU-UUCUGUGGCCCUUAACCCCU --..((((...........----..........---.........))))((((((((..((.(((((...((....((((....))))))))))).)-)....))))))))....... ( -23.61) >DroEre_CAF1 2736 107 - 1 -CCACUCGACACCCUUUCG----AAUUUAUUUC---CACCCAAAU--AGAGGGGCCAAUAAUUUGGCCAAUGACGUGCAAUUAUUUGCCAGCCAACU-UUCUGCGGUCCUUAACCCCU -((..((((.......)))----).(((((((.---.....))))--)))))((((((....))))))...((((.((((....))))).((.....-....)).))).......... ( -21.00) >DroYak_CAF1 2745 106 - 1 CCCGCUGGACACCCU-UCG----CAUUUGUCUG---CACCCAAAU--AGAGG-GCCAAUAAUUUGGCCAAUGACGUGCAAUUAUUUGCCAGCCAACU-CGCCGUGGCCCUUAACCCUA ...((.(((((....-...----....))))))---)........--.((((-((((......((((.(((((.......))))).))))((.....-.))..))))))))....... ( -27.20) >consensus __CACUCGACACCCCUUCC____AAUUUAUUUC___CACCCAAAACGAGAGGGGCCAAUAAUUUGGCCAAUGACGUGCAAUUAUUUGCCAGCCAACU_UUCUGUGGCCCUUAACCCCU .................................................((((((((.....(((((...((....((((....)))))))))))........))))))))....... (-14.20 = -14.97 + 0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:30 2006