Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 123,909 – 124,013 |
Length | 104 |
Max. P | 0.598002 |
Location | 123,909 – 124,013 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 83.58 |
Mean single sequence MFE | -30.28 |
Consensus MFE | -21.52 |
Energy contribution | -21.64 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.19 |
Mean z-score | -1.67 |
Structure conservation index | 0.71 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598002 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 123909 104 + 22224390 AAAGCUUGGCUCUGCCAGUUGGCAAAAGGAAAAACAUUUUUUAACGCUAACUGCGUGGUUGGCAGAUGUUGGAAGUGUUGCCGAG-GCACUGGUAUGAAAAAAAU------------ ...(((((.(((((((....))))...((...(((((((((.((((((((((....)))))))....)))))))))))).)))))-.))..)))...........------------ ( -29.70) >DroSec_CAF1 12006 115 + 1 AAAGCUUGGCUCUGCCAGACGGCAAAAGGAAAAAUAUU-UUUAACGCAAACUGUGUGGUUGGCAGAUGUUGGAAGUGCCGCCGAGGGCACUGGUAGGAAAAAAGUUUUA-UAUAUAU (((((((...((((((((..((((........((((((-(((((((((.....))).))))).))))))).....))))(((...))).))))))))....))))))).-....... ( -32.32) >DroSim_CAF1 17773 115 + 1 AAAGCUUGGCUCUGCCAGACGGCAAAAGGAAAAAUAUU-UUUAACGCAAACUGUGUGGUUGGCAGAUGUUGGAAGUGCUGCCGAGGGCACUGGUAGGAAAAAAGUUUUA-UAUAUAU (((((((...((((((((.((..(((((........))-)))..))).....((((..(((((((((.......)).)))))))..)))))))))))....))))))).-....... ( -30.90) >DroEre_CAF1 18285 114 + 1 AAAGCUUGGCUCUGCUAGACGGCAAAAGGAAAAACAUUU-UUAACGCUUAGUGUGUGGUUGGCAGAUAUUGGAGGUGCUGCCGAG-GCACUGACAAGAAUAA-GUGGUAAUCUAAAA ...(((((..((((((((.(.(((((((........)))-)).((((...)))))).)))))))))..(((..((((((.....)-)))))..)))...)))-))............ ( -27.80) >DroYak_CAF1 14761 116 + 1 AAAGCUUGGCUCUGCCAGAUGGCAAAAGGAAAAACAUUUUUUAACGCUUACUGUGUGGUUGGCAGAUAUUGAAGGUGCUACCGAG-GCACUGCUAAGAAUAAGGUGGUAAUCUAAAG ....((((((((((((((......((((((......)))))).((((.....))))..)))))))).......((((((.....)-)))))))))))....((((....)))).... ( -30.70) >consensus AAAGCUUGGCUCUGCCAGACGGCAAAAGGAAAAACAUUUUUUAACGCUAACUGUGUGGUUGGCAGAUGUUGGAAGUGCUGCCGAG_GCACUGGUAAGAAAAAAGUGGUA_UAUAAAU .....(..((((((((((......((((((......)))))).((((.....))))..)))))))).))..).(((((........))))).......................... (-21.52 = -21.64 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:42 2006