Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,229,507 – 7,229,610 |
Length | 103 |
Max. P | 0.756644 |
Location | 7,229,507 – 7,229,610 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 97.13 |
Mean single sequence MFE | -25.67 |
Consensus MFE | -24.41 |
Energy contribution | -24.29 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.76 |
Structure conservation index | 0.95 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.756644 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7229507 103 + 22224390 AAGUUUGCUU-UGCCAACAAUAGAUCACAGCACCCAAACACAACCACACUAAAUUGGUUGCUUCCUUUUUGCAGGUGGCAACUCUGACG--GAAAAAAGGGGAGAA ..(((((...-(((...............)))..))))).((((((........))))))((((((((((.((((.(....)))))...--...)))))))))).. ( -25.66) >DroSec_CAF1 6053 103 + 1 AAGUUUGCUU-UGCCAACAAUAGAUCACAGCACCCAAACACAACCACACUAAAUUGGUUGCUUCCUUUUUGCAGGUGGCAACUCUGACG--GAAAAAAGGGGAGAA ..(((((...-(((...............)))..))))).((((((........))))))((((((((((.((((.(....)))))...--...)))))))))).. ( -25.66) >DroSim_CAF1 5999 103 + 1 AAGUUUGCUU-UGCCAACAAUAGAUCACAGCACCCAAACACAACCACACUAAAUUGGUUGCUUCCUUUUUGCAGGUGGCAACUCUGACG--GAAAAAAGGGGAGAA ..(((((...-(((...............)))..))))).((((((........))))))((((((((((.((((.(....)))))...--...)))))))))).. ( -25.66) >DroEre_CAF1 6239 106 + 1 AAGUUUGCUUUUACCAACAAUAGAUCACAGCACCCAAACACAACCACACUAAAUUGGUUGCUUCCUUUUUGCAGGUGGCAACCCUGACGGGGAAAAAAGGGAAGAA ..(..((((...................))))..).....((((((........))))))((((((((((.((((.(....)))))........)))))))))).. ( -25.71) >consensus AAGUUUGCUU_UGCCAACAAUAGAUCACAGCACCCAAACACAACCACACUAAAUUGGUUGCUUCCUUUUUGCAGGUGGCAACUCUGACG__GAAAAAAGGGGAGAA ..(((((....(((...............)))..))))).((((((........))))))((((((((((.((((.(....)))))........)))))))))).. (-24.41 = -24.29 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:13 2006