Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,228,075 – 7,228,165 |
Length | 90 |
Max. P | 0.638743 |
Location | 7,228,075 – 7,228,165 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 88.52 |
Mean single sequence MFE | -24.85 |
Consensus MFE | -18.27 |
Energy contribution | -17.65 |
Covariance contribution | -0.62 |
Combinations/Pair | 1.27 |
Mean z-score | -1.66 |
Structure conservation index | 0.74 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638743 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7228075 90 + 22224390 CAAUAGAUGAAAAUGAUCUUGAAACAGUGCAUGCUGAACUGCAGCAGGAUUAAGUGGCCAGGGGACAUGGCUGGUGGAUUUUUUGAGAUC ..............(((((..(((.(((.(((((((.....))))..........((((((....).))))).))).))))))..))))) ( -26.70) >DroSec_CAF1 4634 90 + 1 CAAUAGAUGAAAAUGAUCUUGAAACAGUGCAUGCUGAACUGUAGUAGGACUAAGUGGCCAGGGGACAUGGCUGGUGGAUUGUUUGAGAUC ..............((((((.(((((((.(((.....(((.(((.....))))))((((((....).))))).))).))))))))))))) ( -26.10) >DroSim_CAF1 4584 90 + 1 CAAUAGAUGAAAAUGAUCUUGAAACAGUGCAUGCUGAACUGCAGUAGGACUAAGUGGCCAGGGGGCAUGGCUGGUGGAUUGUUUGAGAUC ..............((((((.(((((((.(((((((.....))))..........(((((.......))))).))).))))))))))))) ( -24.40) >DroEre_CAF1 4435 90 + 1 CAGUAGAUGAAAAUGACCUUGAAACAGUGCAUGCUGAACUGCAGCAGGAUCAGGCGGUCUGUGGACAUGGCAGAUCGGAUGCUUGAGAGC .((((............(((((..(..(((.(((......)))))))..)))))((((((((.......))))))))..))))....... ( -22.20) >consensus CAAUAGAUGAAAAUGAUCUUGAAACAGUGCAUGCUGAACUGCAGCAGGACUAAGUGGCCAGGGGACAUGGCUGGUGGAUUGUUUGAGAUC ..............(((((..((..(((.(.(((((.....)))))).)))...(.(((((.........))))).)....))..))))) (-18.27 = -17.65 + -0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:12 2006