Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,221,993 – 7,222,100 |
Length | 107 |
Max. P | 0.788995 |
Location | 7,221,993 – 7,222,100 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 79.73 |
Mean single sequence MFE | -15.12 |
Consensus MFE | -7.82 |
Energy contribution | -10.08 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.49 |
Structure conservation index | 0.52 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.788995 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7221993 107 - 22224390 UGAAAUGAAAGUCACGUGACAAAAUACACGGGACAUCAUUUCAAUAAAAAAAUACACACCAACAAAACAGAAA-AAAUACU----UCAAGAACAGCGCUGGGUUCAUAAAGA ((((((((..(((.((((........)))).))).))))))))..............................-.......----....((((........))))....... ( -18.60) >DroSec_CAF1 29640 107 - 1 UGAAAUGAAAGUCACGUGACAAAAUACACGGGACAUCAUUUCAAUAAA-AAAUACACACCAACAAAACAGAAAAAAAUACU----UCAAGAACAGCGCUGGGUUCAUAAAGA ((((((((..(((.((((........)))).))).)))))))).....-....................(((........)----))..((((........))))....... ( -18.70) >DroSim_CAF1 36231 107 - 1 UGAAAUGAAAGUCACGUGACAAAAUACACGGGACAUCAUUUCAAUAAA-AAAUACACACCAACAAAACAGAAAAAAAUACU----UCAAGAACAGCGCUGGGUUCAUAAAGA ((((((((..(((.((((........)))).))).)))))))).....-....................(((........)----))..((((........))))....... ( -18.70) >DroAna_CAF1 31545 94 - 1 ----UCGCCAGUCACGUGACAAAAUAAACGAAACAUCAUUUCAAUAAA-A------CACAAACAAAAAAUGCU-AUAUACUUAUUCCAGAAACACCA------ACAAAAUGA ----..((..(((....))).........((((.....))))......-.------..............)).-.......................------......... ( -4.50) >consensus UGAAAUGAAAGUCACGUGACAAAAUACACGGGACAUCAUUUCAAUAAA_AAAUACACACCAACAAAACAGAAA_AAAUACU____UCAAGAACAGCGCUGGGUUCAUAAAGA ((((((((..(((.((((........)))).))).))))))))..................................................................... ( -7.82 = -10.08 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:10 2006