Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,219,759 – 7,219,853 |
Length | 94 |
Max. P | 0.653621 |
Location | 7,219,759 – 7,219,853 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 83.34 |
Mean single sequence MFE | -22.09 |
Consensus MFE | -14.62 |
Energy contribution | -14.82 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.06 |
Mean z-score | -2.36 |
Structure conservation index | 0.66 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.653621 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7219759 94 - 22224390 CUGACCAAA--AAGGACAUAUGUUCAUGGUCAAAUCGAUUAAAUAAAUCAUUAGCAUCUUUUGUGGCCAAUUCCUGUGUCCCUU------GUGUCCUUUUUU--------- ......(((--(((((((((.(..(((((((.....((((.....))))....(((.....)))))))).......))..)..)------))))))))))).--------- ( -21.51) >DroSec_CAF1 27475 93 - 1 CAGACCAAA--AAGGACAUAUGUUCAUGGUCAAAUCGAUUAAAUAAAUCAUUAGCAUCUUUUGUGGCCAAUUCCCGUGUCCCUU------GUGUCCUUUUU---------- ......(((--(((((((((.(..(((((.......((((.....))))....(((.....))).........)))))..)..)------)))))))))))---------- ( -22.90) >DroSim_CAF1 27859 95 - 1 CUGACCAAA--AAGGACAUAUGUUCAUGGUCAAAUCGAUUAAAUAAAUCAUUAGCAUCUUUUGUGGCCAAUUCCCGUGUCCCUU------GUGUCCUUUUUUU-------- ......(((--(((((((((.(..(((((.......((((.....))))....(((.....))).........)))))..)..)------)))))))))))..-------- ( -23.00) >DroEre_CAF1 29445 90 - 1 CUGGACCAA--AAGGACAUGUGUUCAUGGUCAAAUCGAUUAAAUAAAUCAUUAGCAUCUUUUGUGGCCAAUUCCCAUGUCCCUC------GUGUCCUU------------- ..((((...--..(((((((.(....(((((.....((((.....))))....(((.....))))))))...).)))))))...------..))))..------------- ( -25.00) >DroYak_CAF1 31023 105 - 1 CUGUACCAAAAAAGGACAUAUGUUCACGGUCAAAUCGAUUAAAUAAAUCAUUAGCAUCUUUUGUGGCCAAUUCACGUGUCCCUC------GUGUCCUUUUUUCCUUGCCUU ..(((..((((((((((((..(..(((((((.....((((.....))))....(((.....))))))).......)))..)...------))))))))))))...)))... ( -22.31) >DroAna_CAF1 29385 96 - 1 CUGUCUUUAGCCCGAACAUAUGUUCAUGGUCAAAUCGAUUAAAUAAAUCAUUAGCAUCUUUUGUGGCCAAUUCUUGUGUCCUUUUUCCCGGCGUCC--------------- .........(((.((((....)))).(((((.....((((.....))))....(((.....))))))))....................)))....--------------- ( -17.80) >consensus CUGACCAAA__AAGGACAUAUGUUCAUGGUCAAAUCGAUUAAAUAAAUCAUUAGCAUCUUUUGUGGCCAAUUCCCGUGUCCCUU______GUGUCCUUUUU__________ .............((((((.......(((((.....((((.....))))....(((.....))))))))......)))))).............................. (-14.62 = -14.82 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:08 2006