Locus 2692

Sequence ID X_DroMel_CAF1
Location 7,217,894 – 7,217,987
Length 93
Max. P 0.537238
window4409

overview

Window 9

Location 7,217,894 – 7,217,987
Length 93
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 91.79
Mean single sequence MFE -31.40
Consensus MFE -23.28
Energy contribution -23.52
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.72
Structure conservation index 0.74
SVM decision value 0.01
SVM RNA-class probability 0.537238
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7217894 93 + 22224390
CAAGUG-AAUGCU----UUUUCCAGUGCAUUAGCAUUGCCUGGACCACAGUGUGCGUGUCGAAGGACGUCCCACUCUGGGCUGCAGCAGAAAUAUGAA
((.((.-..((((----...(((((.(((.......))))))))(((.((((.(..((((....))))..))))).))).....))))...)).)).. ( -30.30)
>DroSec_CAF1 25610 93 + 1
CAAGUG-AAUGCU----UUUUCCAGUGCAUCAGCAUUGCCUGGACCACAGUGUGCGUGUCGAAGGACGUCCCACUCUGGGCUGCAGCAGAAAUAUGAA
((.((.-..((((----...(((((.(((.......))))))))(((.((((.(..((((....))))..))))).))).....))))...)).)).. ( -30.30)
>DroSim_CAF1 25970 93 + 1
CAAGUG-AAUGCU----UUUUCCAGUGCAUCAGCAUUGCCUGGACCACAGUGUGCGUGUCGAAGGACGUCCCACUCUGGGCUGCAGCAGAAAUAUGAA
((.((.-..((((----...(((((.(((.......))))))))(((.((((.(..((((....))))..))))).))).....))))...)).)).. ( -30.30)
>DroEre_CAF1 27576 96 + 1
CACCUGGAAUG--UUUUUUUUUCUGUGCAUCAGCAUUGGCUGGACCACAGUGUGCGUGUCGAAGGACGUCCCACUCUGUGCUGCAGCAGAAAUAUGAA
...........--......(((((((((((((((....)))))..(((((.(((.(((((....)))).).))).))))).)))).))))))...... ( -32.30)
>DroYak_CAF1 28812 97 + 1
CAGCUG-AGUGCUUUUUUUUUCCAGUGCACUAGCAUUGCCUGGACCACAGUGUGCGUGUCGAAGGACGUCCCACUCUGGGCUGCAGCAGAAAUAUGAA
..((((-...((........(((((.(((.......))))))))(((.((((.(..((((....))))..))))).)))))..))))........... ( -33.80)
>consensus
CAAGUG_AAUGCU____UUUUCCAGUGCAUCAGCAUUGCCUGGACCACAGUGUGCGUGUCGAAGGACGUCCCACUCUGGGCUGCAGCAGAAAUAUGAA
..................((((((((((....)))))).(((.(((.(((.(((.(((((....)))).).))).))))).).)))..))))...... (-23.28 = -23.52 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:05 2006