Locus 2689

Sequence ID X_DroMel_CAF1
Location 7,209,007 – 7,209,125
Length 118
Max. P 0.500000
window4404

overview

Window 4

Location 7,209,007 – 7,209,125
Length 118
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 88.30
Mean single sequence MFE -25.98
Consensus MFE -22.43
Energy contribution -23.18
Covariance contribution 0.75
Combinations/Pair 1.10
Mean z-score -1.42
Structure conservation index 0.86
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7209007 118 + 22224390
AUACAGAAGGCGAGAGAGUACAUCUAUC--UAUAUAUAAAUUAGCAUUUUUCGACGACCGACGGUCGCCUUGGAAUGGUUUAUUAAUGGCAAAUUAAAAGCAAUAAAAAACAGAUGUGCU
................(((((((((...--..............((((((..(.(((((...))))).)..))))))((((.(((((.....)))))))))..........))))))))) ( -24.50)
>DroPse_CAF1 26533 107 + 1
AAA-----------CGAGUACAUCUAUC--UAUAUAUAAAUUAGCAUUUUUGUGCGACCGACGGUCGCCUUGGAAUGGUUUAUUAAUGGCAAAUUAAAAGCAAUAAAAAACAGAUGUGCU
...-----------..(((((((((...--..............((((((...((((((...))))))...))))))((((.(((((.....)))))))))..........))))))))) ( -27.50)
>DroSim_CAF1 17273 118 + 1
AUACUGACGGCGAGAGAGUACAUCUAUC--UAUAUAUAAAUUAGCAUUUUUCGACGACCGACGGUCGCCUUGGAAUGGUUUAUUAAUGGCAAAUUAAAAGCAAUAAAAAACAGAUGUGCU
................(((((((((...--..............((((((..(.(((((...))))).)..))))))((((.(((((.....)))))))))..........))))))))) ( -24.50)
>DroEre_CAF1 18293 118 + 1
AUACGAGCGGCGAGAGAGUACAUCUAUC--UAUAUAUAAAUUAGCAUUUUUGGACGACCGACGGUCGCCUUGGAAUGGUUUAUUAAUGGCAAAUUAAAAGCAAUAAAAAACAGAUGUGCU
................(((((((((...--..............((((((.((.(((((...)))))))..))))))((((.(((((.....)))))))))..........))))))))) ( -27.00)
>DroYak_CAF1 19306 117 + 1
AUGGGAG-AGCGAGUGAGUACAUCUAUC--UAUAUAUAAAUUAGCAUUUUUGGACGACCGACGGUCGCCUUGGAAUGGUUUAUUAAUGGCAAAUUAAAAGCAAUAAAAAACAGAUGUGCU
.......-........(((((((((...--..............((((((.((.(((((...)))))))..))))))((((.(((((.....)))))))))..........))))))))) ( -27.00)
>DroAna_CAF1 18734 118 + 1
AUACA-GCGGCGAAUAGCUAUCCCUAUACAGAUAUAUAAAUUAGCAUU-UCGGACGACCGUCGGUCGCCUCGGAAUGGCUUAUUAAUGGCAAAUUAAAAGCAAUAAAAAACAGAUGUGCU
....(-(((((.....)))........(((..............((((-((((.(((((...))))).).)))))))((((.(((((.....))))))))).............)))))) ( -25.40)
>consensus
AUACA_GCGGCGAGAGAGUACAUCUAUC__UAUAUAUAAAUUAGCAUUUUUGGACGACCGACGGUCGCCUUGGAAUGGUUUAUUAAUGGCAAAUUAAAAGCAAUAAAAAACAGAUGUGCU
................(((((((((...................((((((.((.(((((...))))).)).))))))((((.(((((.....)))))))))..........))))))))) (-22.43 = -23.18 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:01 2006