Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,206,554 – 7,206,653 |
Length | 99 |
Max. P | 0.619664 |
Location | 7,206,554 – 7,206,653 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 92.34 |
Mean single sequence MFE | -18.30 |
Consensus MFE | -16.20 |
Energy contribution | -16.40 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.21 |
Structure conservation index | 0.89 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.619664 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7206554 99 + 22224390 UCGUUUC--UAUCUCUGCGUUGCCCGUUGUUUUCACAGGCAUUAUCAUAAUUUCUGUUUGCAACCCUAAAUCAACACUGCUGGUUUUUUGGGCUCCCAC--CC--- .......--......((.(..(((((((((....(((((.((((...)))).)))))..)))))...((((((.......))))))...))))..))).--..--- ( -18.30) >DroSec_CAF1 14413 98 + 1 UCGUUUC--UAUCUCCGCGU-GCCCGUUGUUUUCACAGGCAUUAUCAUAAUUUCUGUUUGCAACCCUAAAUCAACACUGCUGGUUUUUUGGGCUCCCUC--CC--- .......--.........(.-(((((((((....(((((.((((...)))).)))))..)))))...((((((.......))))))...)))).)....--..--- ( -18.10) >DroSim_CAF1 14805 98 + 1 UCGUUUC--UAUCUCCGCGU-GCCCGUUGUUUUCACAGGCAUUAUCAUAAUUUCUGUUUGCAACCCUAAAUCAACACUGCUGGUUUUUUGGGCUCCCUC--CC--- .......--.........(.-(((((((((....(((((.((((...)))).)))))..)))))...((((((.......))))))...)))).)....--..--- ( -18.10) >DroEre_CAF1 15749 100 + 1 UCGUUUC--UAUCUCCGCGU-GCCCGUUGUUUUCACAGGCAUUAUCAUAAUUUCUGUUUGCAACCCUAAAUCAACACGGCUGGUUUUUUGGCCCACCGCCUCC--- .......--.......((((-(...(((((....(((((.((((...)))).)))))..))))).............(((..(....)..))))).)))....--- ( -18.70) >DroYak_CAF1 16820 105 + 1 UCGUUUCCAUAUCUCCGCGU-GCCCGUUGUUUUCACAGGCAUUAUCAUAAUUUCUGUUUGCAACCCUAAAUCAACACUGCUGGUUUUUUGGGCCACCCUUUUCCCU ..................((-(((((((((....(((((.((((...)))).)))))..)))))...((((((.......))))))...))).))).......... ( -18.30) >consensus UCGUUUC__UAUCUCCGCGU_GCCCGUUGUUUUCACAGGCAUUAUCAUAAUUUCUGUUUGCAACCCUAAAUCAACACUGCUGGUUUUUUGGGCUCCCUC__CC___ .....................(((((((((....(((((.((((...)))).)))))..)))))...((((((.......))))))...))))............. (-16.20 = -16.40 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:59 2006