Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,206,017 – 7,206,130 |
Length | 113 |
Max. P | 0.891823 |
Location | 7,206,017 – 7,206,130 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 81.27 |
Mean single sequence MFE | -38.62 |
Consensus MFE | -19.06 |
Energy contribution | -21.50 |
Covariance contribution | 2.44 |
Combinations/Pair | 1.16 |
Mean z-score | -3.19 |
Structure conservation index | 0.49 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.891823 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7206017 113 - 22224390 UUUGAGUAUAUUUACUCUGCGAUACC-CCUUUCUUCGUUUGCGAGCCUCUGGUUAUUAUCAUUACGAUGAUGACGAACGCAUGAUGCUCAUUAGAGA--GGGGGGUACACA-AAAAA ...(((((....)))))((.(.((((-((((((((.(....)((((.(((((((.(((((((....)))))))..))).)).)).))))....))))--))))))))).))-..... ( -37.30) >DroSec_CAF1 13879 113 - 1 UUUGGGUAUAUUUUCUCAGUGGAACC-CCUUUCUUCGUUUGCGAGCCUCUGGUUAUUAUCAUUAUGAUGAUGACGAACGCAUGAUGCUCAUUAGAGA--GGGGAGUCCACA-AAAAA ..((((........))))(((((.((-(((((((..(....)((((.(((((((((((((.....))))))))).....)).)).))))...)))))--))))..))))).-..... ( -39.00) >DroEre_CAF1 15109 111 - 1 -----AUAUAUCUGCUCUGUGGAACCCCUUUUCUUCUUCCUCGAGCCCCUGGCUUUGAUCAUUAUGAUGACGACGAACGCAUGAUGCUCAUUAGAGAGAGGGGGGUCUCCA-GAAAC -----..........((((..((.(((((((((((.......(((((...)))))(((.(((((((.((........))))))))).)))...))))))))))).))..))-))... ( -37.80) >DroYak_CAF1 16098 115 - 1 UUUGAGCAUAUGUGCUGUGUGGUACC-CUUUUCUUCUUCGGCGAGCCUCUGGUCAUUAUCAUUACGAUGAUGACGAACGCAUGAUGCUCAUUAGAGAGGG-GGGGUCUGCAAAAAAA ....((((....)))).((..(.(((-((..(((((((..(.((((.(((((((((((((.....))))))))).....)).)).)))).)..)))))))-))))))..))...... ( -40.40) >consensus UUUGAGUAUAUUUGCUCUGUGGAACC_CCUUUCUUCGUCUGCGAGCCUCUGGUUAUUAUCAUUACGAUGAUGACGAACGCAUGAUGCUCAUUAGAGA__GGGGGGUCCACA_AAAAA ..................((((.(((.((((((((.......((((.(((((((((((((.....))))))))).....)).)).))))......)))))))))))))))....... (-19.06 = -21.50 + 2.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:58 2006