Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,202,350 – 7,202,453 |
Length | 103 |
Max. P | 0.889784 |
Location | 7,202,350 – 7,202,453 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 91.28 |
Mean single sequence MFE | -15.63 |
Consensus MFE | -13.77 |
Energy contribution | -13.77 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.39 |
Structure conservation index | 0.88 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.889784 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7202350 103 + 22224390 CAACAACAAUAAAAAAAAAACCAAUGAAAAUGAACCAAAAUGAAAUGAAAAUUUUCUGUUGACACCGAAAGAUUUUCAUGGCAAAUGCCUGUCAAAAAUUUUA .......................((((((((....(((...(((((....)))))...)))....(....)))))))))(((....))).............. ( -14.60) >DroSec_CAF1 10233 92 + 1 CAACA-----------AAAACCAAUGAAAAUGAACCAAAAUGAAAUGAAAAUUUUCUGUUGACACCGAAAGAUUUUCAUGGCAAAUGCCAGUCAAAAAUUUUG ...((-----------(((....((((((((....(((...(((((....)))))...)))....(....)))))))))(((....))).........))))) ( -16.40) >DroSim_CAF1 10361 92 + 1 CAACA-----------AAAACCAAUGAAAAUGAACCAAAAUGAAAUGAAAAUUUUCUGUUGACACCGAAAGAUUUUCAUGGCAAAUGCCUGUCAAAAAUUUUG ...((-----------(((....((((((((....(((...(((((....)))))...)))....(....)))))))))(((....))).........))))) ( -15.90) >consensus CAACA___________AAAACCAAUGAAAAUGAACCAAAAUGAAAUGAAAAUUUUCUGUUGACACCGAAAGAUUUUCAUGGCAAAUGCCUGUCAAAAAUUUUG .......................((((((((....(((...((((.......))))..)))....(....)))))))))(((....))).............. (-13.77 = -13.77 + 0.00)
Location | 7,202,350 – 7,202,453 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 91.28 |
Mean single sequence MFE | -16.70 |
Consensus MFE | -16.63 |
Energy contribution | -16.63 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.10 |
Structure conservation index | 1.00 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567268 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7202350 103 - 22224390 UAAAAUUUUUGACAGGCAUUUGCCAUGAAAAUCUUUCGGUGUCAACAGAAAAUUUUCAUUUCAUUUUGGUUCAUUUUCAUUGGUUUUUUUUUUAUUGUUGUUG .((((((..(((..(((....)))((((((((.((((.((....)).)))))))))))).................)))..))))))................ ( -16.70) >DroSec_CAF1 10233 92 - 1 CAAAAUUUUUGACUGGCAUUUGCCAUGAAAAUCUUUCGGUGUCAACAGAAAAUUUUCAUUUCAUUUUGGUUCAUUUUCAUUGGUUUU-----------UGUUG .((((((..(((..(((....)))((((((((.((((.((....)).)))))))))))).................)))..))))))-----------..... ( -16.60) >DroSim_CAF1 10361 92 - 1 CAAAAUUUUUGACAGGCAUUUGCCAUGAAAAUCUUUCGGUGUCAACAGAAAAUUUUCAUUUCAUUUUGGUUCAUUUUCAUUGGUUUU-----------UGUUG .((((((..(((..(((....)))((((((((.((((.((....)).)))))))))))).................)))..))))))-----------..... ( -16.80) >consensus CAAAAUUUUUGACAGGCAUUUGCCAUGAAAAUCUUUCGGUGUCAACAGAAAAUUUUCAUUUCAUUUUGGUUCAUUUUCAUUGGUUUU___________UGUUG .((((((..(((..(((....)))((((((((.((((.((....)).)))))))))))).................)))..))))))................ (-16.63 = -16.63 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:57 2006