Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,196,779 – 7,196,876 |
Length | 97 |
Max. P | 0.522973 |
Location | 7,196,779 – 7,196,876 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 86.47 |
Mean single sequence MFE | -26.68 |
Consensus MFE | -22.97 |
Energy contribution | -23.00 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.04 |
Mean z-score | -1.45 |
Structure conservation index | 0.86 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522973 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7196779 97 + 22224390 GGUUUUGGUCAUCGUCAUCUCUCCGUGGCGUACAAAUGACGGCUUCCGCUUGUGCAUAUUAAGCGUGAAGGAUAAUAAUUUUACACACACCACCCAC---------------------- (((..(((((((((((((......)))))).....)))))..((((((((((.......)))))).)))).................))..)))...---------------------- ( -24.10) >DroSec_CAF1 4518 97 + 1 GGUUUUGGUCAUCGUCAUCUCUCCGUGGCGUACAAAUGACGGCUUCCGCUUGUGCAUAUUAAGCGUGAAGGAUAAUAAUUUUACACACACCACCCAC---------------------- (((..(((((((((((((......)))))).....)))))..((((((((((.......)))))).)))).................))..)))...---------------------- ( -24.10) >DroSim_CAF1 4626 97 + 1 GGUUUUGGUCAUCGUCAUCUCUCCGUGGCGUACAAAUGACGGCUUCCGCUUGUGCAUAUUAAGCGUGAAGGAUAAUAAUUUUACACACACCACCCAC---------------------- (((..(((((((((((((......)))))).....)))))..((((((((((.......)))))).)))).................))..)))...---------------------- ( -24.10) >DroEre_CAF1 4289 119 + 1 GGUUUUGGUCAUCGUCAUCUCUCCGUGGCGUACAAAUGACGGCUUCCGCUUGUGCAUAUUAAGCGUGAAGGAUAAUAAUUUUACACACACCACACACCACCCAACCGCCACCCCUUGGC ((((...(((((((((((......)))))).....)))))..((((((((((.......)))))).))))................................))))((((.....)))) ( -28.10) >DroYak_CAF1 4553 113 + 1 GGUUUUGGUCAUCGUCAUCUCUCCGUGGCGUACAAAUGACGGCUUCCGCUUGUGCAUAUUAAGCGUGAAGGAUAAUAAUUUUACACACACCACACACCAUACACCACCCACCC------ (((..(((((((((((((......)))))).....)))))..((((((((((.......)))))).))))...........................))...)))........------ ( -24.30) >DroAna_CAF1 7293 100 + 1 GGC-UUGGUCAUCGUCAUCUCUCGGUGGCGUACAAAUGACGGCUUCCGCUUGUGCAUAUUAAGCGUGAAGUAUAAUAAUUUUACACAUACUCCCGAG----------CCAU-------- (((-(((((((((((((((....))))))).....))))).(((((((((((.......)))))).)))))......................))))----------))..-------- ( -35.40) >consensus GGUUUUGGUCAUCGUCAUCUCUCCGUGGCGUACAAAUGACGGCUUCCGCUUGUGCAUAUUAAGCGUGAAGGAUAAUAAUUUUACACACACCACCCAC______________________ (((..(((((((((((((......)))))).....)))))..((((((((((.......)))))).)))).............))...)))............................ (-22.97 = -23.00 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:53 2006