Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,194,029 – 7,194,128 |
Length | 99 |
Max. P | 0.552174 |
Location | 7,194,029 – 7,194,128 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 93.85 |
Mean single sequence MFE | -33.75 |
Consensus MFE | -26.28 |
Energy contribution | -26.62 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.04 |
Mean z-score | -2.67 |
Structure conservation index | 0.78 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552174 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7194029 99 - 22224390 ACC-AAAAAGGGGGGGCGG--UCGCGAUUUGUUGACACAGCCAACGCCGCAAAAACAUUGGCGGGCGUGUUAAAUGAAAUGAAAAGCCAAACGCGCGACCGC .((-......))...((((--(((((.(((((((((((.(((..(((((.........)))))))))))))))......(....)..))))..))))))))) ( -35.70) >DroPse_CAF1 3036 99 - 1 ACU-GGGACUG--GGGCUGGCGAGCGAUAUGUUGACACAGCCAACGCCGCAAAAACAUUGGCGGGCGUGUUAAAUGAAAUGAAAAGCCAAACGCGCGACCGC ...-((...((--.(..((((...((.....(((((((.(((..(((((.........)))))))))))))))......))....))))..).))...)).. ( -29.30) >DroSec_CAF1 1852 97 - 1 ACC-AAAAAGG--GGGCGG--UCGCGAUUUGUUGACACAGCCAACGCCGCAAAAACAUUGGCGGGCGUGUUAAAUGAAAUGAAAAGCCAAACGCGCGACCGC .((-......)--).((((--(((((.(((((((((((.(((..(((((.........)))))))))))))))......(....)..))))..))))))))) ( -35.70) >DroSim_CAF1 1967 97 - 1 ACC-AAAAAGG--GGGCGG--UCGCGAUUUGUUGACACAGCCAACGCCGCAAAAACAUUGGCGGGCGUGUUAAAUGAAAUGAAAAGCCAAACGCGCGACCGC .((-......)--).((((--(((((.(((((((((((.(((..(((((.........)))))))))))))))......(....)..))))..))))))))) ( -35.70) >DroEre_CAF1 1704 97 - 1 ACC-AAAAAGG--GGGCGG--UUGCGAUUUGUUGACACAGCCAACGCCGCAAAAACAUUGGCGGGCGUGUUAAAUGAAAUGAAAAGCCAAACGCGCGACCGC .((-......)--).((((--(((((.(((((((((((.(((..(((((.........)))))))))))))))......(....)..))))..))))))))) ( -33.60) >DroYak_CAF1 1798 98 - 1 GGCAAAAAAGG--GGGCGG--UUGCGAUUUGUUGACACAGCCAACGCCGCAAAAACAUUGGCGGGCGUGUUAAAUGAAAUGAAAAGCCAAACGCGCGACCGC ...........--..((((--(((((.(((((((((((.(((..(((((.........)))))))))))))))......(....)..))))..))))))))) ( -32.50) >consensus ACC_AAAAAGG__GGGCGG__UCGCGAUUUGUUGACACAGCCAACGCCGCAAAAACAUUGGCGGGCGUGUUAAAUGAAAUGAAAAGCCAAACGCGCGACCGC ...............((((...((((.(((((((((((.(((..(((((.........)))))))))))))))......(....)..))))))))...)))) (-26.28 = -26.62 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:52 2006