| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,189,705 – 7,189,803 |
| Length | 98 |
| Max. P | 0.612430 |
| Location | 7,189,705 – 7,189,803 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.62 |
| Mean single sequence MFE | -23.90 |
| Consensus MFE | -14.18 |
| Energy contribution | -13.98 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.612430 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7189705 98 + 22224390 UUGCCAUUUCAACGUGUUUUAUCGCGUUUUAAGAGCAGUUUUUAAAAAUUAAAAGCACGUCCUAAGUCCACAUUUGGUCA-A--CAGCUGCUGUCCAA-GAU------------------ .(((..((..((((((......))))))..))..)))(((((((.....)))))))................(((((.((-.--(....).)).))))-)..------------------ ( -18.90) >DroVir_CAF1 19661 115 + 1 UUGCAGUUUCAACGUGUUUUAUCACGUUUUAAGAGCAGUUUUUAAAAAUUAAAAGCACGUCCUAAGUCCACAUUUGGUCA-ACACAGCUGCUGCCCAAAGAACUCGACUGCGCCC----G ..((((((..((((((......))))))....(((..(((((((.....)))))))................(((((.((-.((....)).)).)))))...)))))))))....----. ( -25.40) >DroGri_CAF1 17869 101 + 1 UUGCAGUUUCGACGUGUUUUAUCACGUUUUAAAAGCAGUUUUUAAAUAUUAAAAGCACGUCCUAAGUCCACAUUUGGUCA-ACACAGCUGCUGCCCCAAGAA------------------ ..((((((..((((((((((.......((((((((...)))))))).....))))))))))....(.(((....))).).-....))))))...........------------------ ( -22.90) >DroWil_CAF1 9156 108 + 1 UUGCCAUUUCAACGUGUUUUAUCGCGUUUUAAAAGCAGUUUUUAAAAAUUAAAAGCACGUCCUAAGUCCACAUUUGGUCAAA--CAGCUGG-GACCAG-UUU-------GGGGCCAGAA- .(((..((..((((((......))))))..))..)))(((((((.....)))))))..(((((((((((.((.(((......--))).)))-)))...-.))-------))))).....- ( -28.10) >DroMoj_CAF1 17552 107 + 1 UUGCUGCUUCAACGUGUUUUAUCACGUUUUAAAAGCAGUUUUUAAAAAUUAAAAGCACGUCCUAAGUCCACAUUUGGUCC-ACACAGAUGCUGCC--------UCCACUGCUGCU----G ..(((((((.((((((......))))))....)))))))..............((((.((........((((((((....-...)))))).))..--------......))))))----. ( -23.49) >DroAna_CAF1 5323 97 + 1 UU-UCAUUUUAACGUGUUUUAUCGCGUUUUAAGAGCAGUUUUUAAAAAUUAAAAGCACGUCCUAAGUCCCCAUUUGGUCA-A--CAUCUGUUGACCAA-GAU------------------ ..-........(((((((((......(((((((((...)))))))))....)))))))))............((((((((-(--(....)))))))))-)..------------------ ( -24.60) >consensus UUGCCAUUUCAACGUGUUUUAUCACGUUUUAAAAGCAGUUUUUAAAAAUUAAAAGCACGUCCUAAGUCCACAUUUGGUCA_A__CAGCUGCUGCCCAA_GAU__________________ .(((..((..((((((......))))))..))..)))(((((((.....))))))).........(.((......)).)......................................... (-14.18 = -13.98 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:51 2006