Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,187,032 – 7,187,122 |
Length | 90 |
Max. P | 0.939753 |
Location | 7,187,032 – 7,187,122 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 97.04 |
Mean single sequence MFE | -13.53 |
Consensus MFE | -13.40 |
Energy contribution | -13.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.13 |
Structure conservation index | 0.99 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939753 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7187032 90 + 22224390 CUGAUCAUUGACGGGUUGCAGUCACUGCUGUAGAUUACAAUACAACCAAAUCAACAAUAACCCAACAAAAAAAUCCUUACUACAAUCAAG .......(((..(((((((((...))))(((.((((............)))).)))..)))))..)))...................... ( -13.40) >DroSec_CAF1 6182 90 + 1 CUGAUCAUUGACGGGUUGCAGUCACUGCUGUAGAUUACAAUACAACCAAAUCAACAAUAACCCAACAAAAAAAUCCUUACUACAAUCAAG .......(((..(((((((((...))))(((.((((............)))).)))..)))))..)))...................... ( -13.40) >DroEre_CAF1 4007 87 + 1 CCGAUCAUUGACGGGUUGCAGUCACUGCUGUAGAUUACAAUACAACCAAAUCAACAAUAACCCAACAAA---AUCCUUACUACAAUCAAG ..(((..(((..(((((((((...))))(((.((((............)))).)))..)))))..))).---)))............... ( -13.80) >consensus CUGAUCAUUGACGGGUUGCAGUCACUGCUGUAGAUUACAAUACAACCAAAUCAACAAUAACCCAACAAAAAAAUCCUUACUACAAUCAAG .......(((..(((((((((...))))(((.((((............)))).)))..)))))..)))...................... (-13.40 = -13.40 + 0.00)
Location | 7,187,032 – 7,187,122 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 97.04 |
Mean single sequence MFE | -21.70 |
Consensus MFE | -21.69 |
Energy contribution | -21.47 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -1.53 |
Structure conservation index | 1.00 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691326 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7187032 90 - 22224390 CUUGAUUGUAGUAAGGAUUUUUUUGUUGGGUUAUUGUUGAUUUGGUUGUAUUGUAAUCUACAGCAGUGACUGCAACCCGUCAAUGAUCAG ..((((..(.(...((........(((((((((((((((....(((((.....)))))..))))))))))).))))))..).)..)))). ( -21.70) >DroSec_CAF1 6182 90 - 1 CUUGAUUGUAGUAAGGAUUUUUUUGUUGGGUUAUUGUUGAUUUGGUUGUAUUGUAAUCUACAGCAGUGACUGCAACCCGUCAAUGAUCAG ..((((..(.(...((........(((((((((((((((....(((((.....)))))..))))))))))).))))))..).)..)))). ( -21.70) >DroEre_CAF1 4007 87 - 1 CUUGAUUGUAGUAAGGAU---UUUGUUGGGUUAUUGUUGAUUUGGUUGUAUUGUAAUCUACAGCAGUGACUGCAACCCGUCAAUGAUCGG ..((((..(.(...((..---...(((((((((((((((....(((((.....)))))..))))))))))).))))))..).)..)))). ( -21.70) >consensus CUUGAUUGUAGUAAGGAUUUUUUUGUUGGGUUAUUGUUGAUUUGGUUGUAUUGUAAUCUACAGCAGUGACUGCAACCCGUCAAUGAUCAG ..((((..(.(...((........(((((((((((((((....(((((.....)))))..))))))))))).))))))..).)..)))). (-21.69 = -21.47 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:50 2006