Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 906,353 – 906,447 |
Length | 94 |
Max. P | 0.882758 |
Location | 906,353 – 906,447 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 96.44 |
Mean single sequence MFE | -26.43 |
Consensus MFE | -24.93 |
Energy contribution | -25.27 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.14 |
Structure conservation index | 0.94 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882758 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 906353 94 - 22224390 GGUAAUACAGAUAUUUGUUGCUGGCAGCAGGAGCCUAAGCAUUCGAAGGUUUCUUUUGCAAUGCAAUGACGUCAAAAUCAUGCAGAAAUGUGCU .........(((..(..((((..((((.((((((((..........)))))))).))))...))))..).)))........(((....)))... ( -24.70) >DroSec_CAF1 21274 93 - 1 GGUAAUAAAGAUAUUUGUUGCUGGCAGCAGGAGCCUAAGCAUUUGAAGGUUUCUUUUGC-GUGCAAUGAUGUCAAAAUCAUGCAGAAAUGUGCU (((((((((....))))))))).((((.((((((((..........)))))))).))))-..((.(((((......)))))(((....))))). ( -27.30) >DroSim_CAF1 19988 93 - 1 GGUAAUAAAGAUAUUUGUUGCUGGCAGCAGGAGCCUAAGCAUUCGAAGGUUUCUUUUGC-GUGCAAUGAUGUCAAAAUCAUGCAGAAAUGUGCU (((((((((....))))))))).((((.((((((((..........)))))))).))))-..((.(((((......)))))(((....))))). ( -27.30) >consensus GGUAAUAAAGAUAUUUGUUGCUGGCAGCAGGAGCCUAAGCAUUCGAAGGUUUCUUUUGC_GUGCAAUGAUGUCAAAAUCAUGCAGAAAUGUGCU .........((((.(..((((..((((.((((((((..........)))))))).))))...))))..)))))........(((....)))... (-24.93 = -25.27 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:27 2006