Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,178,849 – 7,178,954 |
Length | 105 |
Max. P | 0.529505 |
Location | 7,178,849 – 7,178,954 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 74.48 |
Mean single sequence MFE | -18.92 |
Consensus MFE | -6.66 |
Energy contribution | -8.30 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.08 |
Mean z-score | -1.72 |
Structure conservation index | 0.35 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.529505 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7178849 105 + 22224390 UUAUCAGCCAUUAUAAGCAGGUCGC---UGAUAAGGCGACCGUCAGAUGUAAUUUAAUUAAUUACACGACAAAAAAUACAUUUAAACAAAAACUAUACGAUUACAAAU ..(((.((........)).((((((---(.....)))))))(((.(.(((((((.....)))))))))))............................)))....... ( -21.20) >DroSec_CAF1 4430 106 + 1 UUAUCAGCCAUUAUAAGCAGGUCGCUGCUGAUAAGGCGACCGUCAGAUGUAAUUUAAUUAAUUACACGACAAAAAAUACAUUUAAACU--AACUGAACGAUUACAAAU ...((((............(((((((........)))))))(((.(.(((((((.....)))))))))))..................--..))))............ ( -23.70) >DroEre_CAF1 6022 102 + 1 UUAUCAGCCAUUA-AAGCAGGUCGC---UGAUAAGGCGGCCGUCAGAUGUAAUUUAAUAAAUUACACGAAAAGAAAUAACUUUCAAGC--AACUAAACGCUUGCUAAU .............-.(((.((((((---(.....)))))))......(((((((.....)))))))......((((....))))((((--........)))))))... ( -21.70) >DroYak_CAF1 7044 103 + 1 UUAUCAGCCAUUAUAAGCAGGUCGC---UGAUAAGGCGGCCGUCAGAUGUAAUUUAAUUAAUUACACGUAAAAAAAUGCAUUAUAACA--AACAAAACUAUUACUAUU ..........(((((((((((((((---(.....)))))))......(((((((.....)))))))..........))).))))))..--.................. ( -21.90) >DroAna_CAF1 10914 81 + 1 UUAUCAAGUCUAAUAAGCAGGUCGC---UGAUAAG----------CAUAUAAUUCAAUUUAGUACACUUAGAGAAG-AGUUUUCA-UC--AA-----CGGUUG----- ((((((.(.((........)).)..---)))))).----------.....(((((..(((((.....)))))...)-))))....-..--..-----......----- ( -6.10) >consensus UUAUCAGCCAUUAUAAGCAGGUCGC___UGAUAAGGCGACCGUCAGAUGUAAUUUAAUUAAUUACACGAAAAAAAAUACAUUUAAACA__AACUAAACGAUUACAAAU ...................((((((..........))))))......(((((((.....))))))).......................................... ( -6.66 = -8.30 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:44 2006