Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,172,846 – 7,172,977 |
Length | 131 |
Max. P | 0.960985 |
Location | 7,172,846 – 7,172,938 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 99.27 |
Mean single sequence MFE | -28.07 |
Consensus MFE | -27.60 |
Energy contribution | -27.60 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.04 |
Structure conservation index | 0.98 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.895163 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7172846 92 + 22224390 CAUCGAACUGGGUGCAGUGGGGUUUUGGGGUGGAUCGGGAGGAGAUAGUCCUAGUUUUUAUUUGUCCCAGAACUGUUGCUGUUUUCAAUUUA ....(((.((((.((((..(((((((((((..(((..(((..((......))..)))..)))..)))))))))).)..)))).)))).))). ( -31.20) >DroSec_CAF1 3070 91 + 1 CAUCGAACUGGGUGCAGUGGGGUU-UGGGGUGGAUCGGGAGGAGAUAGUCCUAGUUUUUAUUUGUCCCAGAACUGUUGCUGUUUUCAAUUUA ....(((.((((.((((..(((((-(((((..(((..(((..((......))..)))..)))..)))))).))).)..)))).)))).))). ( -26.50) >DroSim_CAF1 3063 91 + 1 CAUCGAACUGGGUGCAGUGGGGUU-UGGGGUGGAUCGGGAGGAGAUAGUCCUAGUUUUUAUUUGUCCCAGAACUGUUGCUGUUUUCAAUUUA ....(((.((((.((((..(((((-(((((..(((..(((..((......))..)))..)))..)))))).))).)..)))).)))).))). ( -26.50) >consensus CAUCGAACUGGGUGCAGUGGGGUU_UGGGGUGGAUCGGGAGGAGAUAGUCCUAGUUUUUAUUUGUCCCAGAACUGUUGCUGUUUUCAAUUUA ....(((.((((.((((..(((((.(((((..(((..(((..((......))..)))..)))..))))).)))).)..)))).)))).))). (-27.60 = -27.60 + -0.00)
Location | 7,172,858 – 7,172,977 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 98.87 |
Mean single sequence MFE | -35.10 |
Consensus MFE | -33.37 |
Energy contribution | -33.37 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.71 |
Structure conservation index | 0.95 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.960985 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7172858 119 + 22224390 UGCAGUGGGGUUUUGGGGUGGAUCGGGAGGAGAUAGUCCUAGUUUUUAUUUGUCCCAGAACUGUUGCUGUUUUCAAUUUAAUUCAACACAACUUGUUGACAUGUUAAUUUGGAUUUUCC .((((..(((((((((((..(((..(((..((......))..)))..)))..)))))))))).)..)))).(((((.(((((((((((.....))))))...))))).)))))...... ( -37.10) >DroSec_CAF1 3082 117 + 1 UGCAGUGGGGUU-UGGGGUGGAUCGGGAGGAGAUAGUCCUAGUUUUUAUUUGUCCCAGAACUGUUGCUGUUUUCAAUUUAAUUCAACA-AACUUGUUGACAUGUUAAUUUGGAUUUUCC .((((..(..((-(((((..(((..(((..((......))..)))..)))..))))))).)..))))....(((((.(((((((((((-....))))))...))))).)))))...... ( -34.10) >DroSim_CAF1 3075 117 + 1 UGCAGUGGGGUU-UGGGGUGGAUCGGGAGGAGAUAGUCCUAGUUUUUAUUUGUCCCAGAACUGUUGCUGUUUUCAAUUUAAUUCAACA-AACUUGUUGACAUGUUAAUUUGGAUUUUCC .((((..(..((-(((((..(((..(((..((......))..)))..)))..))))))).)..))))....(((((.(((((((((((-....))))))...))))).)))))...... ( -34.10) >consensus UGCAGUGGGGUU_UGGGGUGGAUCGGGAGGAGAUAGUCCUAGUUUUUAUUUGUCCCAGAACUGUUGCUGUUUUCAAUUUAAUUCAACA_AACUUGUUGACAUGUUAAUUUGGAUUUUCC .((((..(((((.(((((..(((..(((..((......))..)))..)))..))))).)))).)..)))).(((((.(((((((((((.....))))))...))))).)))))...... (-33.37 = -33.37 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:43 2006