Locus 2675

Sequence ID X_DroMel_CAF1
Location 7,167,346 – 7,167,436
Length 90
Max. P 0.957699
window4382

overview

Window 2

Location 7,167,346 – 7,167,436
Length 90
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 94.73
Mean single sequence MFE -20.98
Consensus MFE -18.26
Energy contribution -18.26
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.71
Structure conservation index 0.87
SVM decision value 1.48
SVM RNA-class probability 0.957699
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7167346 90 - 22224390
GCCAGUCAGUCUGGCAUGGCCAAGUGCAUGUCUAUCUGUAUCUCUUUCAGAUGACGACC-------CACCCGUCUGACUUAUUUAUUUUUCUAUUGA
...((((((.(((((...)))).(((..((((.(((((.........)))))))))...-------)))..).)))))).................. ( -21.30)
>DroSec_CAF1 36017 87 - 1
GCCAGUCAGUCUGGCAUGGCCAAGUGCAUGUCUAUCUGUAUCUCUUUCAGAUG---ACC-------CACCCGUCUGACUUAUUUAUUUUUCUAUUGA
...((((((.(((((...)))).(((...(((.(((((.........))))))---)).-------)))..).)))))).................. ( -20.20)
>DroSim_CAF1 29251 87 - 1
GCCAGUCAGUCUGGCAUGGCCAAGUGCAUGUCUAUCUGUAUCUCUUUCAGAUG---ACC-------CACCCGUCUGACUUAUUUAUUUUUCUAUUGA
...((((((.(((((...)))).(((...(((.(((((.........))))))---)).-------)))..).)))))).................. ( -20.20)
>DroEre_CAF1 35826 87 - 1
GCCAGUCAGUCUGGCAUGGCCAAGUGCAUGUCUAUCUGUAUCUCUUUCAGAUG---AAC-------CACCCGUCUGACUUAUUUAUUUUUCUAUUGA
...((((((.(.((((((........))))))((((((.........))))))---...-------.....).)))))).................. ( -18.90)
>DroYak_CAF1 36992 94 - 1
GCCAGUCAGUCUGGCAUGGCCAAGUGCAUGUCUAUCUGUAUCUCUUUCAGAUG---GCCUGGCCCACACCCGUCUGACUUAUUUAUUUUUCUAUUGA
...((((((.(.((...(((((.(.((.....((((((.........))))))---))))))))....)).).)))))).................. ( -24.30)
>consensus
GCCAGUCAGUCUGGCAUGGCCAAGUGCAUGUCUAUCUGUAUCUCUUUCAGAUG___ACC_______CACCCGUCUGACUUAUUUAUUUUUCUAUUGA
...((((((.(.((((((........))))))((((((.........))))))..................).)))))).................. (-18.26 = -18.26 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:41 2006