Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,160,645 – 7,160,765 |
Length | 120 |
Max. P | 0.615813 |
Location | 7,160,645 – 7,160,765 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.55 |
Mean single sequence MFE | -17.07 |
Consensus MFE | -11.83 |
Energy contribution | -13.17 |
Covariance contribution | 1.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.71 |
Structure conservation index | 0.69 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.615813 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7160645 120 - 22224390 GAAAUUUGCUCGGACGACCAAAUUUGUUGUUUAUCUAAAAAACCAAAAUAGAAAUACUAAGGCAAUUUACAAAUUAAAUUAGCCGCAUUAAAGACUACCAAGUUGAUCCGUGGAAAAAUA ....(((.(.((((((((....((((((((((.......))))...))))))........(((((((((.....)))))).))).................)))).)))).).))).... ( -18.80) >DroSec_CAF1 28339 96 - 1 -----------------------UUUUUGUUUGUCUAAA-AACCAAAAUAGAAACACUAAGGCAAUUUACAAAUUAAAUUAGCCGCAUUAAAGACUUCCAAGUUGAUCCUUGGAAAAAUA -----------------------.........((((...-........(((.....))).(((((((((.....)))))).))).......))))(((((((......)))))))..... ( -17.60) >DroSim_CAF1 22627 96 - 1 -----------------------UUUUUGUUUGUCUAAA-ACCCAAAAUAGAAAUACUAAGGCAAUUUACAAAUUAAAUUAGCCGCAUUAAAGACUUCCAAAUUGAUCCUUGGAAAAAUA -----------------------.........((((...-........(((.....))).(((((((((.....)))))).))).......))))((((((........))))))..... ( -14.80) >consensus _______________________UUUUUGUUUGUCUAAA_AACCAAAAUAGAAAUACUAAGGCAAUUUACAAAUUAAAUUAGCCGCAUUAAAGACUUCCAAGUUGAUCCUUGGAAAAAUA ................................((((............(((.....))).(((((((((.....)))))).))).......))))(((((((......)))))))..... (-11.83 = -13.17 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:36 2006