Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,155,895 – 7,155,989 |
Length | 94 |
Max. P | 0.994506 |
Location | 7,155,895 – 7,155,989 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 96.33 |
Mean single sequence MFE | -24.13 |
Consensus MFE | -22.18 |
Energy contribution | -22.02 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.90 |
Structure conservation index | 0.92 |
SVM decision value | 2.49 |
SVM RNA-class probability | 0.994506 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7155895 94 - 22224390 AGGGCUAAAA--AAAACGUUAUUAAGCUUAAAUAUGGCUUAGGGAACUAAAAGGCCAGGCCCAGUGACUGCCAUUAUAACAUCCGAUUGGUGGGAU .(((((....--.....(((....))).......((((((((....)))...)))))))))).....(..(((..............)))..)... ( -24.24) >DroSec_CAF1 23652 95 - 1 AGGGCUAAAA-AAAAACGUUUGUAAGUUUAAAUAUGGCUUAGGGAACUAAAAGGCCAGGCCCAGUGACUGCCAUUAUAACAUCCGAUUGGUGGGAU .(((((....-..((((........)))).....((((((((....)))...)))))))))).....(..(((..............)))..)... ( -25.84) >DroSim_CAF1 18035 96 - 1 AGGGCUAAAAAAAAAACGUUUUUAAGCUUAAAUAUGGCUUAGGGAACUAAAAGGCCAGGCCCAGUGACUGCCAUUAUAACAUCCGAUUGGUGGGAU .(((((...........(((....))).......((((((((....)))...)))))))))).....(..(((..............)))..)... ( -24.04) >DroEre_CAF1 24468 94 - 1 AGGGCUAAAA-AAAAACGUU-UUAAGCUUAAAUAUGGCUUAGAGAACUAAAAGGCCAGGCCCAGUGACUGCCAUUAUAACAUCCGAUUGGUGGGAU .(((((....-.......((-(((((((.......))))))))).............))))).....(..(((..............)))..)... ( -22.29) >DroYak_CAF1 24116 95 - 1 AGGGCUAAAA-AAAAAGGUUUUUAAGCUUAAAUAUGGCUUAGGGUACUAAAAGGCCAGGCCCAGUGACUGCCAUUAUAACAUCCGAUUGGUGGGAU .(((((....-....(((((....))))).....((((((((....)))...)))))))))).....(..(((..............)))..)... ( -24.24) >consensus AGGGCUAAAA_AAAAACGUUUUUAAGCUUAAAUAUGGCUUAGGGAACUAAAAGGCCAGGCCCAGUGACUGCCAUUAUAACAUCCGAUUGGUGGGAU .(((((...........(((....))).......((((((((....)))...)))))))))).....(..(((..............)))..)... (-22.18 = -22.02 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:35 2006