Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,154,503 – 7,154,611 |
Length | 108 |
Max. P | 0.994914 |
Location | 7,154,503 – 7,154,611 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 93.46 |
Mean single sequence MFE | -34.52 |
Consensus MFE | -29.80 |
Energy contribution | -29.76 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.66 |
Structure conservation index | 0.86 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.944222 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7154503 108 + 22224390 UCCUCGAAUGUCCUUUCGGCGGCCAAAAUAGCCGCUGUUGUUGCCGCCGCCAUGGCCACCAGCAAUGGCAAUCCCACACCGACAGCAACAAUCCCCGCCAGCAGCAGC ....((((......))))(((((.......))))).((((((((....(((((.((.....)).)))))...............((..........))..)))))))) ( -30.80) >DroSec_CAF1 22263 104 + 1 UCCUCGAAUGUCCUUUCGGCGGCCAAAAUAGCCGCUGUUGUUGCUGCCGCCAUGGCCACCAGCAAUGGCAAUCCCACACCGACAGCAACAAUCCCCGCCAGCAG---- ....((((......))))(((((.......))))).((((((((((.((...(((...(((....))).....)))...)).))))))))))............---- ( -32.40) >DroSim_CAF1 16682 104 + 1 UCCUCGAAUGUCCUUUCGGCGGCCAAAAUAGCCGCUGUUGUUGCCGCCGCCAUGGCCACCAGCAAUGGCAAUCCCACACCGACAGCAACAAUCCCCGCCAGCAG---- .....(((......)))((((((.......)))(((((((.((.....(((((.((.....)).))))).......)).)))))))..........))).....---- ( -30.30) >DroEre_CAF1 23041 107 + 1 CCGUCGAGUGUCCUUUCGGCGGCCAAAAUAGCCGCUGUUGUGGCCGCCGCCAUGGCCACCAGCAAUGGCAAUCCCACACCGACAGCAGCAAUCCCCGCCAGCAGCAG- ..((((.((((......((((((((.(((((...))))).))))))))(((((.((.....)).)))))......)))))))).((.((...........)).))..- ( -43.60) >DroYak_CAF1 22678 107 + 1 GCAACGAGUGUCCUUUCGGCGGCCAAAAUAGCCGCUGUUGUUGCCGCCGCCAUGGCCACCAGCAAUGGCAAUGCCACACCGACAGCAACCAUCCCCGCCACCAGCAG- ((...(((......)))((((((.......)))(((((((.((..((.(((((.((.....)).)))))...))..)).)))))))..........)))....))..- ( -35.50) >consensus UCCUCGAAUGUCCUUUCGGCGGCCAAAAUAGCCGCUGUUGUUGCCGCCGCCAUGGCCACCAGCAAUGGCAAUCCCACACCGACAGCAACAAUCCCCGCCAGCAGCAG_ .....(((......)))((((((.......)))(((((((.((.....(((((.((.....)).))))).......)).)))))))..........)))......... (-29.80 = -29.76 + -0.04)
Location | 7,154,503 – 7,154,611 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 93.46 |
Mean single sequence MFE | -47.02 |
Consensus MFE | -42.32 |
Energy contribution | -42.52 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.06 |
Mean z-score | -1.91 |
Structure conservation index | 0.90 |
SVM decision value | 2.52 |
SVM RNA-class probability | 0.994914 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7154503 108 - 22224390 GCUGCUGCUGGCGGGGAUUGUUGCUGUCGGUGUGGGAUUGCCAUUGCUGGUGGCCAUGGCGGCGGCAACAACAGCGGCUAUUUUGGCCGCCGAAAGGACAUUCGAGGA (((((((....)))...((((((((((((.(((((..(..(((....)))..)))))).))))))))))))))))((((.....))))(((....)).)......... ( -47.60) >DroSec_CAF1 22263 104 - 1 ----CUGCUGGCGGGGAUUGUUGCUGUCGGUGUGGGAUUGCCAUUGCUGGUGGCCAUGGCGGCAGCAACAACAGCGGCUAUUUUGGCCGCCGAAAGGACAUUCGAGGA ----..((((.......((((((((((((.(((((..(..(((....)))..)))))).))))))))))))))))((((.....))))(((....)).)......... ( -44.81) >DroSim_CAF1 16682 104 - 1 ----CUGCUGGCGGGGAUUGUUGCUGUCGGUGUGGGAUUGCCAUUGCUGGUGGCCAUGGCGGCGGCAACAACAGCGGCUAUUUUGGCCGCCGAAAGGACAUUCGAGGA ----..((((.......((((((((((((.(((((..(..(((....)))..)))))).))))))))))))))))((((.....))))(((....)).)......... ( -44.11) >DroEre_CAF1 23041 107 - 1 -CUGCUGCUGGCGGGGAUUGCUGCUGUCGGUGUGGGAUUGCCAUUGCUGGUGGCCAUGGCGGCGGCCACAACAGCGGCUAUUUUGGCCGCCGAAAGGACACUCGACGG -...((((.(((.(((((.((((((((((((((((.....))).)))))((((((........)))))).)))))))).))))).)))(((....)).)....).))) ( -46.20) >DroYak_CAF1 22678 107 - 1 -CUGCUGGUGGCGGGGAUGGUUGCUGUCGGUGUGGCAUUGCCAUUGCUGGUGGCCAUGGCGGCGGCAACAACAGCGGCUAUUUUGGCCGCCGAAAGGACACUCGUUGC -((..(((((((.((((((((((((((.(.(((.((...(((((.((.....)).))))).)).))).).)))))))))))))).)))))))..))............ ( -52.40) >consensus _CUGCUGCUGGCGGGGAUUGUUGCUGUCGGUGUGGGAUUGCCAUUGCUGGUGGCCAUGGCGGCGGCAACAACAGCGGCUAUUUUGGCCGCCGAAAGGACAUUCGAGGA ...........((((..((((((((((((.(((((..(..(((....)))..)))))).))))))))))))..((((((.....))))))(....)....)))).... (-42.32 = -42.52 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:34 2006