Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,154,098 – 7,154,202 |
Length | 104 |
Max. P | 0.996697 |
Location | 7,154,098 – 7,154,202 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 96.54 |
Mean single sequence MFE | -39.41 |
Consensus MFE | -35.38 |
Energy contribution | -36.42 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.03 |
Mean z-score | -2.16 |
Structure conservation index | 0.90 |
SVM decision value | 2.73 |
SVM RNA-class probability | 0.996697 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7154098 104 + 22224390 CCGGCGGUCAAGGUGUUCCAUCAGCUGAGCCAUCCGCUGGUGCACCAGUUGCAUCACCAUCACGCCGCCGCGGUGGGUCAUCAUCAUCAUCAUGCCGCCCACCA .(((((((...((((....((((((.((....)).))))))(((.....)))..)))).....))))))).(((((((...(((.......)))..))))))). ( -41.10) >DroSec_CAF1 21873 104 + 1 CCGGCGGUCAAGGUAUUCCAUCAGCUGAGCCAUCCGCUGGUGCACCAGUUGCAUCACCAUCAUGCCGCGGCGGUGGGUCAUCAUCAUCAUCAUGCCGCCCACCA ..((((((...((....))....(.(((.(((.(((((((....)).((.((((.......)))).)))))))))).))).)...........))))))..... ( -34.90) >DroSim_CAF1 16283 104 + 1 CCGGCGGUCAAGGUGUUCCAUCCGCUGAGCCAUCCGCUGGUGCACCAGUUGCAUCACCACCAUGCCGCGGCGGUGGGUCAUCAUCAUCAUCAUGCCGCCCACCA (((.(((.((.((((........((.((....)).))(((((((.....))))))).)))).)))))))).(((((((...(((.......)))..))))))). ( -38.70) >DroEre_CAF1 22645 104 + 1 CCGGCGGUCAAGGUGUUCCAUCAGCUGAGCCAUCCGCUGGUGCAUCAGUUGCAUCACCAUCAUGCCGCCGCGGUGGGGCAUCAUCAUCAUCACGCCGCCCACCA .(((((((...((((....((((((.((....)).))))))(((.....)))..)))).....))))))).((((((((..............))..)))))). ( -40.34) >DroYak_CAF1 22276 104 + 1 CCGGCGGUCAAGGUGUUCCAUCAGCUGAGCCAUCCGCUGGUGCAUCAGUUGCAUCACCAUCAUGCCGCCGCGGUGGGUCAUCAUCAUCAUCAUGCCGCCCACCA .(((((((...((((....((((((.((....)).))))))(((.....)))..)))).....))))))).(((((((...(((.......)))..))))))). ( -42.00) >consensus CCGGCGGUCAAGGUGUUCCAUCAGCUGAGCCAUCCGCUGGUGCACCAGUUGCAUCACCAUCAUGCCGCCGCGGUGGGUCAUCAUCAUCAUCAUGCCGCCCACCA .((((((.((.((((........((.((....)).))(((((((.....))))))).)))).)))))))).(((((((...(((.......)))..))))))). (-35.38 = -36.42 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:33 2006