Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 905,081 – 905,176 |
Length | 95 |
Max. P | 0.542837 |
Location | 905,081 – 905,176 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 78.12 |
Mean single sequence MFE | -23.67 |
Consensus MFE | -18.77 |
Energy contribution | -17.38 |
Covariance contribution | -1.39 |
Combinations/Pair | 1.33 |
Mean z-score | -0.84 |
Structure conservation index | 0.79 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542837 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 905081 95 + 22224390 AAUCGGGGAGGCGGCGGGCAGAGCGCCUGCUGUGCAGACCUGCGGAAAUUCAAACGGAAUCAAAGUGAAAAGUUCGAUAAAAAAAUCAUCGAC-AC-------------------- ..(((..((((((((((((.....)))))))))(((....))).....)))...)))..............((.((((.........))))))-..-------------------- ( -24.80) >DroPse_CAF1 31507 115 + 1 AAUGGUAGUUGUAGUGGGUGGAUGGCCCACUGUGCGAACCUGCGGAAAUUCAAACGGAAUCAAAGCGAAAAGUUCGACAAA-AAAUCAUCGAGCACUAAAAAAAUAAGAAUCGACU ......(((((.(((((((.....)))))))((((((((.(((....((((.....))))....)))....))))((....-...)).....))))...............))))) ( -24.80) >DroSec_CAF1 20014 94 + 1 AAUUGAGGAGGCGGCGGGCAGAGCGCCUGCUGUGCAGACCUGCGGAAAUUCAAACGGAAUCAAAGUGAAAAGUUCGGUAAA-AAAUCAUCGAC-AC-------------------- ..(((((...(((((((((.....)))))))))(((....))).....)))))..................((.((((...-.....))))))-..-------------------- ( -24.20) >DroSim_CAF1 18907 94 + 1 AAUUGAGGAGGCGGCGGGCAGAGCGCCUGCUGUGCAGACCUGCGGAAAUUCAAACGGAAUCAAAGUGAAAAGUUCGGUAAA-AAAUCAUCGAC-AC-------------------- ..(((((...(((((((((.....)))))))))(((....))).....)))))..................((.((((...-.....))))))-..-------------------- ( -24.20) >DroEre_CAF1 14058 94 + 1 AAACGAGGAGGCGACGGGCAGAGCGCCUGCUGUGCAGACCUGCGGAAAUUCAAACGGAAUCAAAGUGAAAAGUUCGGUAAA-AAAUCAUCGAC-AC-------------------- ...(((((..(((.(((((.....)))))...)))...))(((.(((......((.........))......))).)))..-......)))..-..-------------------- ( -19.20) >DroPer_CAF1 32188 115 + 1 AAUGGUAGUUGUAGUGGGUGGAUGGCCCACUGUGCGAACCUGCGGAAAUUCAAACGGAAUCAAAGCGAAAAGUUCGACAAA-AAAUCAUCGAGCACUAAAAAAAUAAGAAUCGACU ......(((((.(((((((.....)))))))((((((((.(((....((((.....))))....)))....))))((....-...)).....))))...............))))) ( -24.80) >consensus AAUCGAGGAGGCGGCGGGCAGAGCGCCUGCUGUGCAGACCUGCGGAAAUUCAAACGGAAUCAAAGUGAAAAGUUCGAUAAA_AAAUCAUCGAC_AC____________________ ..........(((((((((.....)))))))))(((....)))...........((((.((.....))....))))........................................ (-18.77 = -17.38 + -1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:26 2006