Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,153,054 – 7,153,275 |
Length | 221 |
Max. P | 0.864047 |
Location | 7,153,054 – 7,153,167 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 95.78 |
Mean single sequence MFE | -45.84 |
Consensus MFE | -41.56 |
Energy contribution | -42.36 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.39 |
Structure conservation index | 0.91 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864047 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7153054 113 - 22224390 CGGCGUUCUAGUUCGAAGAUACGUUCUAGACUGCCUCGCCUCGGCCGGCGUCGCUGCCGGCGCCGCCGUCGACUGCGGUUCACUCUGAAAUGCUCA--CGCACACAGGCGUAAAG .((((.(((((..((......))..))))).)))).(((((.(((.(((((((....))))))))))((((...(((.(((.....))).)))...--)).))..)))))..... ( -46.00) >DroSec_CAF1 20829 113 - 1 CGGCGUUCUAGUUCGAAGAUACGUUCUAGACUGCCGCUCCUCGGCCGGCGUCGCUGCCGGCGCCGCCGUCGACUGCGGUUCACUCAGAAAUGCUCA--CGCACACAGGCGUAAAG (((((.(((((..((......))..))))).))))).((..((((.(((((((....)))))))))))..))..(((.(((.....))).)))..(--(((......)))).... ( -44.60) >DroSim_CAF1 15241 113 - 1 CGGCGUUCUAGUUCGAAGAUACGUUCUAGACUGCCGCUCCUCGGCCGGCGUCGCUGCCGGCGCCGCCGUCGACUGCGGUUCACUCAGAAAUGCUCA--CGCACACAGGCGUAAAG (((((.(((((..((......))..))))).))))).((..((((.(((((((....)))))))))))..))..(((.(((.....))).)))..(--(((......)))).... ( -44.60) >DroEre_CAF1 21567 113 - 1 CGGCGUUCUAGUUCGAAGAUACGUUCUAGACUGCCGCGCCUCUGCCGGCGUCGCUGCCGGCGCCGCUGUCGACUGCGGUUCACUCAGAAAUGCUCA--CGCAUACAGCCGUAAAG (((((.(((((..((......))..))))).))))).......(((((((....)))))))((.(((((...(((.(.....).)))..((((...--.))))))))).)).... ( -42.40) >DroYak_CAF1 21190 115 - 1 CGGCGUUCUAGUUCGAAGAUACGUUCUAGACUGCCGCGCCUCGGCCGGCGUCGCUGCCGGCGCCGCUGUCGACAGCGGUUCACUCAGCAAUGCUCACACGCACACAGGCGUAAAG .((((.(((((..((......))..))))).))))((((((.((((((((....)))))))(((((((....)))))))...........(((......)))..))))))).... ( -51.60) >consensus CGGCGUUCUAGUUCGAAGAUACGUUCUAGACUGCCGCGCCUCGGCCGGCGUCGCUGCCGGCGCCGCCGUCGACUGCGGUUCACUCAGAAAUGCUCA__CGCACACAGGCGUAAAG .((((.(((((..((......))..))))).))))((((((..(((((((....)))))))(((((.(....).)))))...........(((......)))...)))))).... (-41.56 = -42.36 + 0.80)
Location | 7,153,167 – 7,153,275 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 96.89 |
Mean single sequence MFE | -26.72 |
Consensus MFE | -21.00 |
Energy contribution | -20.84 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.90 |
Structure conservation index | 0.79 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567865 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7153167 108 + 22224390 AGGGCAGAACAAUUGUGUUUUGGAUUCCUUGCCGUGCGGAUCGCAAACGCGAGUUAUGAGAAGAGCGUAGUAAAACGUACGAGAAGUAGCUAACAAGAAA-AG--GAAAAG ....(((((((....)))))))..((((((((..((((...))))...)).((((((.....(.((((......)))).).....))))))........)-))--)))... ( -25.50) >DroSec_CAF1 20942 108 + 1 AGGGCAGAACAAUUGUGUUUUGGAUUCCUUGCCGUGCGGAUCGCAAACGCGAGUUAUGAGAAGAGCGUAGUAAAACGUACGAGAAGUAGUUAACAAGAAA-AG--GAAAAG ....(((((((....)))))))..((((((..((((((..((((....)))).(((((.......))))).....))))))....((.....)).....)-))--)))... ( -24.70) >DroSim_CAF1 15354 108 + 1 AGGGCAGAACAAUUGUGUUUUGGAUUCCUUGCCGUGCGGAUCGCAAACGCGAGUUAUGAGAAGAGCGUAGCAAAACGUACGAGAAGUAGCUAACAAGAAA-AG--GAAAAG ....(((((((....)))))))..((((((..((((((..((((....))))((((((.......))))))....))))))....((.....)).....)-))--)))... ( -28.80) >DroEre_CAF1 21680 111 + 1 AGGGCAGAACAAUUGUGUUUUGGAUUCCUUGCCGUGCGGAUCGCAAACGCGAGUUAUGAGAAGAGCGUAGUGAAACGUACGAGAAGUAGCUAACAAGAAAAAAGGAAAAAG ....(((((((....)))))))..((((((..((((((..((((..((((...((....))...)))).))))..))))))....((.....)).......)))))).... ( -29.10) >DroYak_CAF1 21305 109 + 1 AGGGCAGAACAAUUGUGUUUUGGAUUCCUUGCCGUGCGGAUCGCAAACGCGAGUUAUGAGAAGAGCGUAGUAAAACGUACGAGAAGUAGCUAACAAGAAAAAG--GAAAAG ....(((((((....)))))))..((((((((..((((...))))...)).((((((.....(.((((......)))).).....)))))).........)))--)))... ( -25.50) >consensus AGGGCAGAACAAUUGUGUUUUGGAUUCCUUGCCGUGCGGAUCGCAAACGCGAGUUAUGAGAAGAGCGUAGUAAAACGUACGAGAAGUAGCUAACAAGAAA_AG__GAAAAG (((((((((((....)))))))...))))...((((((..((((....))))((((((.......))))))....)))))).............................. (-21.00 = -20.84 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:32 2006