Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,152,098 – 7,152,201 |
Length | 103 |
Max. P | 0.850898 |
Location | 7,152,098 – 7,152,201 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 91.98 |
Mean single sequence MFE | -35.42 |
Consensus MFE | -27.36 |
Energy contribution | -27.98 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.06 |
Mean z-score | -1.71 |
Structure conservation index | 0.77 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584764 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7152098 103 + 22224390 UGCACACGUGUGU----------GUGCGUGUGUGUAUCUGUAUGAGCAACUGGCAGAGCCAGCGAAUUUGUAGCGCAGCCAGAAACAACAACACAACGCAACACGGCAACAGC (((...(((((((----------((..((((.(((.((((..((.((..(((((...)))))((....))..)).))..)))).)))...)))).)))).))))))))..... ( -33.50) >DroSec_CAF1 19838 103 + 1 UGCACACGUGUGU----------GUGCGUGUGUGUAUCUGUAUGAGCAACUGGCAGAGCCAGCGAAUUUGUAGCGCAGCCAGAAACAACAACACAGCGCAACACGGCAACAGC (((...(((((.(----------((((((((.(((.((((..((.((..(((((...)))))((....))..)).))..)))).)))...)))).)))))))))))))..... ( -35.60) >DroSim_CAF1 14299 103 + 1 UGCACACGUGUGU----------GUGCAUGUGUGUAUCUGUAUGAGCAACUGGCAGAGCCAGCGAAUUUGUAGCGCAGCCAGAAACAACAACACAGCGCAACACGGCAACAGC (((...(((((.(----------((((.(((((((.((((..((.((..(((((...)))))((....))..)).))..)))).))....))))))))))))))))))..... ( -33.10) >DroYak_CAF1 20190 113 + 1 UGCACGCGUGUGUGUGUUCGCGUGUGCAUGUGUGUAUCUGUGCGGGCAACUGGCAGAGCCAGCGAAUUUGUAGCGCAGCCAGAAACAACAACACAGCACAACACGGCAACAGC ((((((((((........)))))))))).((((....(((((..(....(((((...((..(((....))).))...)))))......)..)))))....))))(....)... ( -39.50) >consensus UGCACACGUGUGU__________GUGCAUGUGUGUAUCUGUAUGAGCAACUGGCAGAGCCAGCGAAUUUGUAGCGCAGCCAGAAACAACAACACAGCGCAACACGGCAACAGC ((((((((((..((((....))))..)))))))))).((((....((..(((((...)))))......(((.((((...................)))).)))..)).)))). (-27.36 = -27.98 + 0.62)
Location | 7,152,098 – 7,152,201 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 91.98 |
Mean single sequence MFE | -36.80 |
Consensus MFE | -30.40 |
Energy contribution | -29.39 |
Covariance contribution | -1.00 |
Combinations/Pair | 1.17 |
Mean z-score | -1.98 |
Structure conservation index | 0.83 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.850898 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7152098 103 - 22224390 GCUGUUGCCGUGUUGCGUUGUGUUGUUGUUUCUGGCUGCGCUACAAAUUCGCUGGCUCUGCCAGUUGCUCAUACAGAUACACACACGCAC----------ACACACGUGUGCA ((....((((((((((((((((((((.((..(((((.(.(((((......).)))).).)))))..))....)))...))))).))))).----------..))))).)))). ( -34.70) >DroSec_CAF1 19838 103 - 1 GCUGUUGCCGUGUUGCGCUGUGUUGUUGUUUCUGGCUGCGCUACAAAUUCGCUGGCUCUGCCAGUUGCUCAUACAGAUACACACACGCAC----------ACACACGUGUGCA ((....)).((((....((((((.(..((..(((((.(.(((((......).)))).).)))))..)).)))))))..))))....((((----------((....)))))). ( -36.70) >DroSim_CAF1 14299 103 - 1 GCUGUUGCCGUGUUGCGCUGUGUUGUUGUUUCUGGCUGCGCUACAAAUUCGCUGGCUCUGCCAGUUGCUCAUACAGAUACACACAUGCAC----------ACACACGUGUGCA ((....)).((((....((((((.(..((..(((((.(.(((((......).)))).).)))))..)).)))))))..))))...(((((----------((....))))))) ( -36.60) >DroYak_CAF1 20190 113 - 1 GCUGUUGCCGUGUUGUGCUGUGUUGUUGUUUCUGGCUGCGCUACAAAUUCGCUGGCUCUGCCAGUUGCCCGCACAGAUACACACAUGCACACGCGAACACACACACGCGUGCA .....(((.((((.(((((((((....((..(((((.(.(((((......).)))).).)))))..))..)))))).)))))))..)))((((((..........)))))).. ( -39.20) >consensus GCUGUUGCCGUGUUGCGCUGUGUUGUUGUUUCUGGCUGCGCUACAAAUUCGCUGGCUCUGCCAGUUGCUCAUACAGAUACACACACGCAC__________ACACACGUGUGCA ((....)).((((....((((((....((..(((((.(.(((((......).)))).).)))))..))..))))))..)))).(((((..................))))).. (-30.40 = -29.39 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:30 2006