Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,151,362 – 7,151,463 |
Length | 101 |
Max. P | 0.989787 |
Location | 7,151,362 – 7,151,463 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 82.21 |
Mean single sequence MFE | -30.92 |
Consensus MFE | -21.01 |
Energy contribution | -22.20 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.12 |
Mean z-score | -2.85 |
Structure conservation index | 0.68 |
SVM decision value | 2.18 |
SVM RNA-class probability | 0.989787 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7151362 101 + 22224390 AAAAAAUCACGCACACACAGAACCAC------ACACGCAUGCAAAUAGCGAAAGAGAGCGAGGUGUCUGCGGCAGUGUGUGUGUGUGUUUCAUUCAUGAAU-CCAGAU .....(((..(((((((((....(((------((.((((.(((....((........))....))).))))...))))))))))))))((((....)))).-...))) ( -31.30) >DroSec_CAF1 19098 100 + 1 A-AAAAUCACGCACACACAGAACCAC------ACACGCAUGCAAAUAGCGAAAGAGAGCGAGGUGUCUGCGGCAGUGUGUGUGUGUGUUUCAUUCAUGAAU-CCAGAU .-...(((..(((((((((....(((------((.((((.(((....((........))....))).))))...))))))))))))))((((....)))).-...))) ( -31.30) >DroEre_CAF1 19789 87 + 1 U-AAACACACACACACA------------------CGCAUGCGAAUAGCGAAAGAGAGCGAGGUGUUUGCGCCAGUGUGU--GCGUGUUUCAUUCAUGAAUUCCAGAU .-((((((.(((((((.------------------((((.(((....((........))....))).))))...))))))--).)))))).................. ( -28.00) >DroYak_CAF1 19419 105 + 1 A-AAAAACACACACAUACACACCCACAGUCAAACUCGCAUGCGAAUAGCAAAAGAGAGCGAGGUGUGUGCGCCAGUGUGU--GUGUGUUUCAUUCAUGAAUUCCAGAU .-..((((((((((((((...............(((...(((.....)))...))).....((((....)))).))))))--)))))))).................. ( -33.10) >consensus A_AAAAACACACACACACAGAACCAC______ACACGCAUGCAAAUAGCGAAAGAGAGCGAGGUGUCUGCGCCAGUGUGU__GUGUGUUUCAUUCAUGAAU_CCAGAU .......((((((((((((................((((..((....((........))....))..))))....)))))))))))).((((....))))........ (-21.01 = -22.20 + 1.19)
Location | 7,151,362 – 7,151,463 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 82.21 |
Mean single sequence MFE | -31.32 |
Consensus MFE | -14.90 |
Energy contribution | -19.59 |
Covariance contribution | 4.69 |
Combinations/Pair | 1.04 |
Mean z-score | -2.82 |
Structure conservation index | 0.48 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512006 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7151362 101 - 22224390 AUCUGG-AUUCAUGAAUGAAACACACACACACACUGCCGCAGACACCUCGCUCUCUUUCGCUAUUUGCAUGCGUGU------GUGGUUCUGUGUGUGCGUGAUUUUUU ......-.((((....)))).(((.((((((((..((((((.((.....((........)).....(....))).)------)))))..)))))))).)))....... ( -31.40) >DroSec_CAF1 19098 100 - 1 AUCUGG-AUUCAUGAAUGAAACACACACACACACUGCCGCAGACACCUCGCUCUCUUUCGCUAUUUGCAUGCGUGU------GUGGUUCUGUGUGUGCGUGAUUUU-U ......-.((((....)))).(((.((((((((..((((((.((.....((........)).....(....))).)------)))))..)))))))).))).....-. ( -31.40) >DroEre_CAF1 19789 87 - 1 AUCUGGAAUUCAUGAAUGAAACACGC--ACACACUGGCGCAAACACCUCGCUCUCUUUCGCUAUUCGCAUGCG------------------UGUGUGUGUGUGUUU-A ..................((((((((--((((((..(((((........((........))........))))------------------)))))))))))))))-. ( -28.29) >DroYak_CAF1 19419 105 - 1 AUCUGGAAUUCAUGAAUGAAACACAC--ACACACUGGCGCACACACCUCGCUCUCUUUUGCUAUUCGCAUGCGAGUUUGACUGUGGGUGUGUAUGUGUGUGUUUUU-U .................(((((((((--(((.....((((((.(((.(((..(((...(((.....)))...)))..)))..))).)))))).)))))))))))).-. ( -34.20) >consensus AUCUGG_AUUCAUGAAUGAAACACAC__ACACACUGCCGCAGACACCUCGCUCUCUUUCGCUAUUCGCAUGCGUGU______GUGGUUCUGUGUGUGCGUGAUUUU_U .................((((((((((((((((..(((((........(((...................))).........)))))..))))))))))))))))... (-14.90 = -19.59 + 4.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:28 2006