Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,146,140 – 7,146,241 |
Length | 101 |
Max. P | 0.967289 |
Location | 7,146,140 – 7,146,241 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 93.85 |
Mean single sequence MFE | -37.60 |
Consensus MFE | -35.30 |
Energy contribution | -35.63 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.59 |
Structure conservation index | 0.94 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967289 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7146140 101 + 22224390 ACACGGUGUGGCGCUUUAUGCUGCGCUGCUUGGGGCGCAGCCGAAAGAAG---AAGAAGCGACCGAAGAGGAGCCAAAGAAGCCGAAGCAGCGUCAGAAUGCAU ...((((.(((((((((..((((((((......))))))))(....)...---..)))))..((.....)).)))).....)))).....((((....)))).. ( -38.10) >DroSim_CAF1 8261 104 + 1 ACACGGUGUGGCGCUUUAUGCUGCGCUGCUUGGGGCGCAGCCGAAAGAAGAAGAAGAAGCGACCGAAGAGGAGCCAAAGAAGCCGAAGCAGCGCCAGAAUGCAA ...((((.(((((((((..((((((((......))))))))(....)........)))))..((.....)).)))).....))))..(((.........))).. ( -37.50) >DroEre_CAF1 14367 101 + 1 ACACGGUGUGGCGCUUUAUGCUGCGCUGCUUGGGGCGCAGCCGAAAGAAG---AAGAAGCGGCAGAAGAGGAGCCAAAGAAGCCGGAGCAGCGGCACAAUGCAA ...((((.((((.((((.(((((((((((.......)))))(....)...---.....))))))...)))).)))).....)))).....(((......))).. ( -37.20) >consensus ACACGGUGUGGCGCUUUAUGCUGCGCUGCUUGGGGCGCAGCCGAAAGAAG___AAGAAGCGACCGAAGAGGAGCCAAAGAAGCCGAAGCAGCGCCAGAAUGCAA ...((((.(((((((((..((((((((......))))))))(....)........)))))..((.....)).)))).....))))..(((.........))).. (-35.30 = -35.63 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:25 2006