Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,144,926 – 7,145,027 |
Length | 101 |
Max. P | 0.999495 |
Location | 7,144,926 – 7,145,027 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 94.39 |
Mean single sequence MFE | -49.46 |
Consensus MFE | -45.52 |
Energy contribution | -45.04 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.06 |
Mean z-score | -2.26 |
Structure conservation index | 0.92 |
SVM decision value | 3.65 |
SVM RNA-class probability | 0.999495 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7144926 101 + 22224390 GACGUCGGCA------GCGGCAGAGUUGUCGGCAGCGACGACAGAGUGUCUGGCGGCGUAGCAAGACUGGCGACAUUCUGUCUGGUGGCGAUCGCCGCAACGUUGCC ...(((((((------((......))))))))).((((((((((((((((.(.((((.......).))).))))))))))))..(((((....)))))...))))). ( -51.30) >DroSec_CAF1 12691 101 + 1 GACGUCGACA------GCGGCAGAGUCGUCGGCAGCGACGACAGAGUGUCUGGCGGCGUAGCAAGACUGGCGACAUUCUGUCUGGUGGCGAUCGCCGCAACGUUGCC ...((((((.------((......)).)))))).((((((((((((((((.(.((((.......).))).))))))))))))..(((((....)))))...))))). ( -48.10) >DroSim_CAF1 7064 101 + 1 GACGUCGACA------GCGGCAGAGUCGUCGGCAGCGACGACAGAGUGUCUGGCGGCGUAGCAAGACUGGCGACAUUCUGUCUGGUGGCGAUCGCCGCAACGUUGCC ...((((((.------((......)).)))))).((((((((((((((((.(.((((.......).))).))))))))))))..(((((....)))))...))))). ( -48.10) >DroEre_CAF1 13123 107 + 1 GACGUCGGCAGCGGCAGCGGCAGAGUCGUUGGCAGCGACGACAGAGUGUCUGGCGGCGUAGCAAGACUGGCGACAUUCUGUCUGGUGUCGAUCGGCGCAACGUUGCC (((.((.((.((....)).)).)))))...(((((((..(((((((((((.(.((((.......).))).))))))))))))..(((((....)))))..))))))) ( -48.40) >DroYak_CAF1 12824 107 + 1 GACGUCGGCAGUGGCAGCGGCAGAGUCGUCGGCAGCGACGACAGAGUGUCUGGCGGCGUAGCAAGACUGGCGACAUUCUGUCUGGUGGCGAUCGCCGCAACGUUGCC ((((.(.((.((....)).))...).))))(((((((..(((((((((((.(.((((.......).))).))))))))))))..(((((....)))))..))))))) ( -51.40) >consensus GACGUCGGCA______GCGGCAGAGUCGUCGGCAGCGACGACAGAGUGUCUGGCGGCGUAGCAAGACUGGCGACAUUCUGUCUGGUGGCGAUCGCCGCAACGUUGCC (((((((..........))))...)))...(((((((..(((((((((((.(.((((.......).))).))))))))))))..(((((....)))))..))))))) (-45.52 = -45.04 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:24 2006