Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,144,459 – 7,144,563 |
Length | 104 |
Max. P | 0.825115 |
Location | 7,144,459 – 7,144,563 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 93.84 |
Mean single sequence MFE | -22.47 |
Consensus MFE | -21.04 |
Energy contribution | -21.04 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.24 |
Structure conservation index | 0.94 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.825115 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7144459 104 - 22224390 UAUAUCCCCCUUUGUGGUGCGACCUCGACUUUGGCAAACUGAUCGAUCGAUCGAUUGCUGCACCACCACGCAACCACCAAUCGCCAGCCAACU----ACAACUACUGA ...........(((((((.((....))...(((((.....((((....))))(((((.(((........))).....))))))))))...)))----))))....... ( -23.00) >DroSec_CAF1 12220 104 - 1 UAUAUCCCCCUUUGUGGUGCGACCUCGACUUUGGCAAACUGAUCGAUCGAUCGAUUGCUGCACCACCACGCAACCACCAAUCGCCGGCCAACU----ACAACUACUGA ...........(((((((.((....))....((((.....((((....))))(((((.(((........))).....)))))....)))))))----))))....... ( -22.40) >DroSim_CAF1 6582 104 - 1 UAUAUCCCCCUUUGUGGUGCGACCUCGACUUUGGCAAACUGAUCGAUCGAUCGAUUGCUGCACCACCACGCAACCACCAAUCGCCGGCCAACU----ACAACUACCGA ...........(((((((.((....))....((((.....((((....))))(((((.(((........))).....)))))....)))))))----))))....... ( -22.40) >DroEre_CAF1 12641 107 - 1 UAUA-UCCCCUUUGUGGUGCGACCUCGACUUUGGCAAACUGAUCGAUCGAUCGAUUGCUGCACCACCACGCAACCAACAAUCGCCAGCCAACUAUGUACAACUACUAA ....-........(((((...((.......(((((.....((((....))))(((((.(((........))).....))))))))))........))...)))))... ( -21.56) >DroYak_CAF1 12329 99 - 1 -----ACCCCUUUGUGGUGCGACCUCGACUUUGGCAAACUGAUCGAUCGAUCGAUUGCUGCACCACCACGCAACCAACAAUCGCCAGCCAACU----ACAACUACUGA -----......(((((((.((....))...(((((.....((((....))))(((((.(((........))).....))))))))))...)))----))))....... ( -23.00) >consensus UAUAUCCCCCUUUGUGGUGCGACCUCGACUUUGGCAAACUGAUCGAUCGAUCGAUUGCUGCACCACCACGCAACCACCAAUCGCCAGCCAACU____ACAACUACUGA .............(((((.((....))...(((((.....((((....))))(((((.(((........))).....)))))....))))).........)))))... (-21.04 = -21.04 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:23 2006