Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,140,013 – 7,140,134 |
Length | 121 |
Max. P | 0.997466 |
Location | 7,140,013 – 7,140,121 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 96.03 |
Mean single sequence MFE | -33.58 |
Consensus MFE | -30.24 |
Energy contribution | -30.64 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.15 |
Structure conservation index | 0.90 |
SVM decision value | 2.86 |
SVM RNA-class probability | 0.997466 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7140013 108 + 22224390 AGUGGGCACAUUUUGUAGAGCUUGAACUUUACCUUUGAAAGGGUUGCUCUUGCUCC-CUUUUGAAACUCUGACCUUCAGAAGGAAAAGGAAACCCGGUGCUCAAGUCCC ..(((((((.....((((((......))))))........(((((..((((....(-((((((((.........)))))))))..)))).))))).)))))))...... ( -34.10) >DroSec_CAF1 7790 108 + 1 AGUGGGCACAUUUUGUCGAGCUUGAACUUUACCUUUCAAAGGGUUGCUCUUGCUCC-CUUUUGAAACUCUGACCUUCAGAAGGAAAAGGAAACCCGGUGCUCAAGUCCC ..(((((((......((((((..((.(...(((((....))))).).))..))))(-((((((((.........))))))))).....))......)))))))...... ( -32.90) >DroSim_CAF1 2157 108 + 1 AGUGGGCACAUUUUGUAGAGCUUGAACUUUACCUUUCAAAGGGUUGCUCUUGCUCC-CUUUUGAAACUCUGACCUUCAGAAGGAAAAGGAAACCCGGUGCUCAAGUCCC ..(((((((.....((((((......))))))........(((((..((((....(-((((((((.........)))))))))..)))).))))).)))))))...... ( -34.10) >DroEre_CAF1 8012 107 + 1 AGUGGGCACUU-UUGUAGAGCUUGAACUUUACCUUACAAAGGGUUGCUCUUGCUCC-CUUUUGAAACUCUGACCUUCAGAAGGAAAAGGAAACCCGGUGCUCAAGUCCC ..((((((((.-..((((((......))))))........(((((..((((....(-((((((((.........)))))))))..)))).)))))))))))))...... ( -34.40) >DroYak_CAF1 7585 109 + 1 AGUGGGCACUCGUUGUAGAGCUUGAACUUAACCAUUGAAAGGGUUGCUCUUGCUCCCCUUUUGAAACUCUGACCUUCAGAAGGAAAAGGAAACCCGGUGCUCAAGUCCC ..(((((((.((.....((((..((...(((((........))))).))..)))).(((((((((.........)))))))))....(....).)))))))))...... ( -32.40) >consensus AGUGGGCACAUUUUGUAGAGCUUGAACUUUACCUUUCAAAGGGUUGCUCUUGCUCC_CUUUUGAAACUCUGACCUUCAGAAGGAAAAGGAAACCCGGUGCUCAAGUCCC ..(((((((.....((((((......))))))........(((((..((((..(((..(((((((.........)))))))))).)))).))))).)))))))...... (-30.24 = -30.64 + 0.40)
Location | 7,140,013 – 7,140,121 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 96.03 |
Mean single sequence MFE | -31.82 |
Consensus MFE | -26.77 |
Energy contribution | -26.97 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.47 |
Structure conservation index | 0.84 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663293 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7140013 108 - 22224390 GGGACUUGAGCACCGGGUUUCCUUUUCCUUCUGAAGGUCAGAGUUUCAAAAG-GGAGCAAGAGCAACCCUUUCAAAGGUAAAGUUCAAGCUCUACAAAAUGUGCCCACU (((....((((.....((((((((((..(((((.....)))))....)))))-)))))..((((.(((........)))...))))..))))(((.....))))))... ( -30.80) >DroSec_CAF1 7790 108 - 1 GGGACUUGAGCACCGGGUUUCCUUUUCCUUCUGAAGGUCAGAGUUUCAAAAG-GGAGCAAGAGCAACCCUUUGAAAGGUAAAGUUCAAGCUCGACAAAAUGUGCCCACU (((((((((((.....((((((((((..(((((.....)))))....)))))-)))))..((((.(((........)))...))))..))))))......)).)))... ( -32.00) >DroSim_CAF1 2157 108 - 1 GGGACUUGAGCACCGGGUUUCCUUUUCCUUCUGAAGGUCAGAGUUUCAAAAG-GGAGCAAGAGCAACCCUUUGAAAGGUAAAGUUCAAGCUCUACAAAAUGUGCCCACU (((.(((((((((((((........)))(((((.....)))))(((((((.(-(..((....))..)).))))))))))...)))))))...(((.....))))))... ( -30.80) >DroEre_CAF1 8012 107 - 1 GGGACUUGAGCACCGGGUUUCCUUUUCCUUCUGAAGGUCAGAGUUUCAAAAG-GGAGCAAGAGCAACCCUUUGUAAGGUAAAGUUCAAGCUCUACAA-AAGUGCCCACU (((((((((((.....((((((((((..(((((.....)))))....)))))-)))))..((((.(((........)))...))))..)))).....-)))).)))... ( -32.70) >DroYak_CAF1 7585 109 - 1 GGGACUUGAGCACCGGGUUUCCUUUUCCUUCUGAAGGUCAGAGUUUCAAAAGGGGAGCAAGAGCAACCCUUUCAAUGGUUAAGUUCAAGCUCUACAACGAGUGCCCACU ((((((((............((((((..(((((.....)))))....))))))(((((..((((((((........))))..))))..)))))....))))).)))... ( -32.80) >consensus GGGACUUGAGCACCGGGUUUCCUUUUCCUUCUGAAGGUCAGAGUUUCAAAAG_GGAGCAAGAGCAACCCUUUGAAAGGUAAAGUUCAAGCUCUACAAAAUGUGCCCACU (((.(((((((((((((((..(((((...((((.....))))(((((......)))))))))).))))).......)))...)))))))...(((.....))))))... (-26.77 = -26.97 + 0.20)
Location | 7,140,042 – 7,140,134 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 97.62 |
Mean single sequence MFE | -32.56 |
Consensus MFE | -26.60 |
Energy contribution | -26.60 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.63 |
Structure conservation index | 0.82 |
SVM decision value | 2.14 |
SVM RNA-class probability | 0.988853 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7140042 92 + 22224390 UACCUUUGAAAGGGUUGCUCUUGCUCC-CUUUUGAAACUCUGACCUUCAGAAGGAAAAGGAAACCCGGUGCUCAAGUCCCGGAGUGCCUUUAA ..((((..((((((..((....)).))-))))..))..((((.....)))).)).(((((..((((((..(....)..)))).)).))))).. ( -32.40) >DroSec_CAF1 7819 92 + 1 UACCUUUCAAAGGGUUGCUCUUGCUCC-CUUUUGAAACUCUGACCUUCAGAAGGAAAAGGAAACCCGGUGCUCAAGUCCCGGAGUGCCUUUAA ..((((((((((((..((....))..)-))))))))..((((.....))))))).(((((..((((((..(....)..)))).)).))))).. ( -33.10) >DroSim_CAF1 2186 92 + 1 UACCUUUCAAAGGGUUGCUCUUGCUCC-CUUUUGAAACUCUGACCUUCAGAAGGAAAAGGAAACCCGGUGCUCAAGUCCCGGAGUGCCUUUAA ..((((((((((((..((....))..)-))))))))..((((.....))))))).(((((..((((((..(....)..)))).)).))))).. ( -33.10) >DroEre_CAF1 8040 92 + 1 UACCUUACAAAGGGUUGCUCUUGCUCC-CUUUUGAAACUCUGACCUUCAGAAGGAAAAGGAAACCCGGUGCUCAAGUCCCGGAGUGCCUUUAA ..((((.(((((((..((....))..)-)))))).....(((.....))))))).(((((..((((((..(....)..)))).)).))))).. ( -30.90) >DroYak_CAF1 7614 93 + 1 AACCAUUGAAAGGGUUGCUCUUGCUCCCCUUUUGAAACUCUGACCUUCAGAAGGAAAAGGAAACCCGGUGCUCAAGUCCCGGAGUGCCUUUAA ..((.(..((((((..((....))..))))))..)...((((.....)))).)).(((((..((((((..(....)..)))).)).))))).. ( -33.30) >consensus UACCUUUCAAAGGGUUGCUCUUGCUCC_CUUUUGAAACUCUGACCUUCAGAAGGAAAAGGAAACCCGGUGCUCAAGUCCCGGAGUGCCUUUAA ...........(((((..((((..(((..(((((((.........)))))))))).)))).)))))((..(((........)))..))..... (-26.60 = -26.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:20 2006