Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 901,285 – 901,381 |
Length | 96 |
Max. P | 0.939245 |
Location | 901,285 – 901,381 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 77.99 |
Mean single sequence MFE | -34.05 |
Consensus MFE | -21.18 |
Energy contribution | -21.21 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.35 |
Mean z-score | -2.15 |
Structure conservation index | 0.62 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939245 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 901285 96 - 22224390 GCUGCUGCUCCUCCAAAACUAAGACCCUUCUUUGACAUCAGGGCGGCAGCUACGGCUGCUGCUUUCCUAGUUUUCUCCUCCUUGGAAGCCGCAUCC ((.(((........(((((((.((.......(((....)))(((((((((....))))))))).)).))))))).(((.....)))))).)).... ( -32.10) >DroVir_CAF1 10388 96 - 1 GCAGUUGCAUUAGCGCCACCAAGACCCUUUUUGCUUAUCAGUGCAGCGGCAACGGCAGCCGCUUUGCGCGUCUUCUCCUCCUUAGAAGCGGCGUCC ((....))....(((((.......................((((((((((.......)))))..)))))(.(((((.......))))))))))).. ( -29.50) >DroPse_CAF1 26645 96 - 1 GCUGCAGCUCCUCCAAAACUAAGUCCCUUCUUGCUCAUGAGCGCUGCGGCCACGGCGGCCGCCUUGCGCGUCUUCUCCUCCUUGGAGGCGGCAUCC ......((((((((((...((((......)))).......((((.((((((.....))))))...))))............))))))).))).... ( -36.00) >DroSec_CAF1 16336 96 - 1 GCUGCUGCUCCUCCAAAACUAAGCCCCUUCUUUGACAUUAGGGCGGCAGCUACAGCUGCUGCUUUCCUAGUUUUCUCCUCCUUGGAAGCCGCAUCC ..(((.(((..(((((..(.(((......))).)..((((((((((((((....))))))))...))))))..........)))))))).)))... ( -29.50) >DroMoj_CAF1 10320 93 - 1 GCAGCUG---UGCCGCCGCCCAGACCCUUUUUGCUGAUCAGGGCAGCGGCCACAGCAGCCGCCUUGCGAGUCUUCUCCUCCUUGGAAGCGGCGUCC ...((((---((((((.((((.((..(........).)).)))).)))).)))))).(((((.((.((((..........)))).))))))).... ( -41.20) >DroPer_CAF1 27258 95 - 1 GCUGCAGCUCCUCCAAAACUAAGUCCCUUCUUGCUCAUGAGCGCUGCGGCCACGGCGGCCGCCUUGCGCGUCUUCUC-UCCUUGGAGGCGGCAUCC ......((((((((((...((((......)))).......((((.((((((.....))))))...))))........-...))))))).))).... ( -36.00) >consensus GCUGCUGCUCCUCCAAAACUAAGACCCUUCUUGCUCAUCAGGGCAGCGGCCACGGCAGCCGCCUUGCGAGUCUUCUCCUCCUUGGAAGCGGCAUCC ((((((((...........((((......)))).........)))))))).......((((((((...................)))))))).... (-21.18 = -21.21 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:25 2006