Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,139,403 – 7,139,505 |
Length | 102 |
Max. P | 0.750885 |
Location | 7,139,403 – 7,139,505 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 79.63 |
Mean single sequence MFE | -32.14 |
Consensus MFE | -23.08 |
Energy contribution | -23.32 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.26 |
Mean z-score | -1.67 |
Structure conservation index | 0.72 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.750885 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7139403 102 + 22224390 GUGCGCGUUUGUUUGGCCUGCCUUUAUACAUGGUGAAUGCGUC--UGUGUGCAAGUGCACACCAAUGGCCACUUAAAUAGCACCCAAA--GAGUAGAAGUUUUCAA ((((..(((((..(((((.((.(((((.....))))).))...--.((((((....))))))....)))))..))))).)))).....--(((........))).. ( -31.60) >DroSec_CAF1 7200 102 + 1 GUGCGCGUUUGUUUGGCCUGCCUUUAU--AUGGUGAAUCCGUCAAUGUGUGCAAGUGCACAGGAAAGGCCACUUAAAUAGCACCCAAA--CAGAAGGAGUUUCCAU ((((..(((((..((((((.((.....--((((.....)))).....(((((....)))))))..))))))..))))).)))).....--.....((.....)).. ( -31.70) >DroSim_CAF1 1131 98 + 1 GUGCGCGUUUGUUUGGCCUGCCUUUAU--AUGGAGAAUGCGUCAAUGUGUGCAAGUGCACAGCAAAGGCCACUUGAAUAGCACCCAAA--CAGAA----UUUCCAA ((((..(((((..((((((((.(((..--.....))).)).....(((((((....))))).)).))))))..))))).)))).....--.....----....... ( -27.00) >DroEre_CAF1 7344 104 + 1 GCCCGCGUUUGUUUGGCCUGCCUUUAU--AUGGUGAGUGCUUCAAUGUGUGCAAGCGCACAGCGCGGGGCACACAAAUAGCGCCCAAAGCCAAAAGCGGUCUCCGC ..((((.....((((((..(((.....--..)))(.(((((....(((((((..((((...))))...)))))))...))))).)...)))))).))))....... ( -41.70) >DroYak_CAF1 6870 102 + 1 GUGCGCGUUUGUUUGGCCUGCCUUUAU--AUGGCGAACGCGUCAGUGUGUGCGAGCGCACACCAAAGGCCACAAAAAUAGUAACAAAA--CAAAAAAAUUACAGGG .(((..((((...((((((........--.(((((....)))))(((((((....)))))))...))))))...)))).)))......--................ ( -28.70) >consensus GUGCGCGUUUGUUUGGCCUGCCUUUAU__AUGGUGAAUGCGUCAAUGUGUGCAAGUGCACAGCAAAGGCCACUUAAAUAGCACCCAAA__CAGAAGAAGUUUCCAA ((((..(((((..(((((((((.........))).............(((((....)))))....))))))..))))).))))....................... (-23.08 = -23.32 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:17 2006