Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,135,815 – 7,135,934 |
Length | 119 |
Max. P | 0.876220 |
Location | 7,135,815 – 7,135,934 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.58 |
Mean single sequence MFE | -30.68 |
Consensus MFE | -23.23 |
Energy contribution | -24.60 |
Covariance contribution | 1.37 |
Combinations/Pair | 1.07 |
Mean z-score | -2.01 |
Structure conservation index | 0.76 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.876220 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7135815 119 - 22224390 AUAUUUGGCAAAAAUUAAUAGUGAGGAGCGGAAAGCGAAAGGAUAAUAGGGU-AGCGGAGACGAAGCCUUAUAUUUCCACCAGAAAAUCCUGGCACAAUUUAUGACAACUCUACACUUGU ...................((((.((((.(((((.(....)....(((((((-..((....))..))))))).))))).((((......))))...............)))).))))... ( -32.00) >DroSec_CAF1 3701 115 - 1 UUUUUUGCCAAAA----AAAGUGAGGAGUGGAAAGCGAAAGGAUAAUAGGGA-AGCGGAUACGAAGCCUUAUAUUUCCACCAGAAAAUCCUGGCACAAUUUAUGACAACUCUACACUUGU .............----.(((((.((((((((((.(....)....((((((.-..((....))...)))))).))))).((((......))))..............))))).))))).. ( -30.50) >DroEre_CAF1 3804 115 - 1 UUUUAUUUCCCAA----AGAGUGAGGAGUGGAAAGCGAAAGGAUAAUAAGGAAAUCGGAGAGGAAGCCCUAUUUUUCCACCAGAAAAUCCUGCCACAAUUAAU-GCAACUCUACACUCGU .............----.(((((.((((((((...(....)........(((((......(((....)))...))))).........)))(((..........-)))))))).))))).. ( -25.70) >DroYak_CAF1 2997 116 - 1 AUUUCGCUCCCAA----AGAGUGAGGAGUGGCAAGCGAAAGGAUAAUAGGGAAAUCGGAGAGGAAGCCUUAUAUUUCCACCAGCAAAUCCUGGCCCAAUUUAUGGCAGCUCUACACUCGU ..(((((((....----.)))))))(((((...(((...(((((.....((((((..(((.(....))))..))))))........))))).(((........))).)))...))))).. ( -34.52) >consensus AUUUUUGUCAAAA____AGAGUGAGGAGUGGAAAGCGAAAGGAUAAUAGGGA_AGCGGAGACGAAGCCUUAUAUUUCCACCAGAAAAUCCUGGCACAAUUUAUGACAACUCUACACUCGU ..................(((((.((((((((((.(....)....((((((....((....))...)))))).))))).((((......))))..............))))).))))).. (-23.23 = -24.60 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:16 2006