Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,118,204 – 7,118,312 |
Length | 108 |
Max. P | 0.552408 |
Location | 7,118,204 – 7,118,312 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 83.82 |
Mean single sequence MFE | -39.04 |
Consensus MFE | -27.50 |
Energy contribution | -30.03 |
Covariance contribution | 2.53 |
Combinations/Pair | 1.03 |
Mean z-score | -1.89 |
Structure conservation index | 0.70 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552408 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7118204 108 - 22224390 UUAUGGCCGACCCCUUGCCGAGGGAUGACGCCUCUGUCGCGGUCGGCAGCCUCCGUUAUCCUUCGAAGGAUCUACCC-----CAUCUCUCGACCCAAGGAUGCGGACGUCUUU .....(((((((....((.((((.......)))).))...))))))).((.(((((.(((((((((..(((......-----.)))..))))....)))))))))).)).... ( -39.80) >DroPse_CAF1 66896 81 - 1 ------AGGACCCCUCGCUGAGGGAUGACGCCUCUGUCGUGGUCUACAGCCUCCGUUAUCCUUC-AAGGAUCUCCCU-----C---UCU-----------------GUUCUUU ------.(((..(((...((((((((((((...((((.(....).))))....)))))))))))-))))...)))..-----.---...-----------------....... ( -24.30) >DroSec_CAF1 109313 106 - 1 UUAUGGCCGACCCCUUGCCGAGGGAUGACGCCUCUGUCGCGGUCGGCAGCCUCCGUUAUCCUUCGAAGGAUCUACCC-----C--CUCUCGACCCAAGGAUGCGGACGUCUUU .....(((((((....((.((((.......)))).))...))))))).((.(((((.((((((((((((........-----)--)).))))....)))))))))).)).... ( -39.70) >DroSim_CAF1 108940 106 - 1 UUAUGGCCGACCCCUUGCCGAGGGAUGACGCCUCUGUCGCGGUCGGCAGCCUCCGUUAUCCUUCGAAGGAUCUACCC-----C--CUAUCGACCCAAGGAUGCGGACGUCUUU .....(((((((....((.((((.......)))).))...))))))).((.(((((.((((((((((((........-----)--)).))))....)))))))))).)).... ( -39.70) >DroEre_CAF1 111733 110 - 1 UCAUGGCCGACCCCUUGCCGAGGGAUGACGCCUCUGUCGCGGUCGGCAGCCUCCGUUAUCCUGCA-AGGAUCUACCCCUACCC--CUCGCGGCCCAAGGAUGCGGCCGUCUUU ..(((((((...(((((((..(((((((((...((((((....))))))....)))))))))((.-(((.............)--)).)))))..))))...))))))).... ( -44.52) >DroYak_CAF1 113473 106 - 1 UGAUGGCCGACCCCUUGCCGAGGGAUGACGCCUCUGUCGCGGUCGGCAGCCUCCGUUAUCCUGCGCAGGAUCUACCC-----C--CUCUCGACCCAAGGAUGCGGCCGUCUUU .((((((((...(((((.((((((((((((...((((((....))))))....)))))))).....(((........-----)--))))))...)))))...))))))))... ( -46.20) >consensus UUAUGGCCGACCCCUUGCCGAGGGAUGACGCCUCUGUCGCGGUCGGCAGCCUCCGUUAUCCUUCGAAGGAUCUACCC_____C__CUCUCGACCCAAGGAUGCGGACGUCUUU ..(((.(((...(((((.((((((((((((...((((((....))))))....))))))))))))..((.....))..................)))))...))).))).... (-27.50 = -30.03 + 2.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:12 2006