Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,106,152 – 7,106,257 |
Length | 105 |
Max. P | 0.795723 |
Location | 7,106,152 – 7,106,257 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 88.26 |
Mean single sequence MFE | -21.12 |
Consensus MFE | -16.92 |
Energy contribution | -16.93 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.79 |
Structure conservation index | 0.80 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.795723 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7106152 105 + 22224390 CAAGUGCCGCCUCCUCCCCCCCCCCUCCCCC-UAUAUUUUAUUCCUAUCGCAGGACACAGCCACAUUUGCAUACGUGCGGCCAAUGUCCCAGGACAAACACACACA ...(.((((((....................-..........((((.....))))....((.......))....).))))))..((((....)))).......... ( -17.80) >DroSec_CAF1 97485 90 + 1 CAAGUGCCGCCUCCUC-----------CCCC-UAUAUUUUAUUCCUAUCGCAGGACACAGCCACAUUUGCAUACGUGCGGCCAAUGUCCCAGGACAAACACA---- ...(.((((((.....-----------....-..........((((.....))))....((.......))....).))))))..((((....))))......---- ( -17.80) >DroSim_CAF1 97504 90 + 1 CAAGUGCCGCCUCCUC-----------CCCC-UAUAUUUUAUUCCUAUCGCAGGACACAGCCACAUUUGCAUACGUGCGGCCAAUGUCCCAGGACAAACACA---- ...(.((((((.....-----------....-..........((((.....))))....((.......))....).))))))..((((....))))......---- ( -17.80) >DroEre_CAF1 99106 95 + 1 CAAGUGGCGCCUCCUG-----------CCCCGUACGCUUUAUUCCUAUCGCAGGACACAGCCACAUUUGCAUACGUGCGGCCAAUGUCCCAGGACAAACACGCACA ...(((((...(((((-----------(.....................))))))....)))))..........(((((.....((((....))))....))))). ( -31.10) >consensus CAAGUGCCGCCUCCUC___________CCCC_UAUAUUUUAUUCCUAUCGCAGGACACAGCCACAUUUGCAUACGUGCGGCCAAUGUCCCAGGACAAACACA____ ...(((..(((...............................((((.....)))).............(((....))))))...((((....))))..)))..... (-16.92 = -16.93 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:08 2006