Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,103,067 – 7,103,201 |
Length | 134 |
Max. P | 0.827447 |
Location | 7,103,067 – 7,103,162 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 78.45 |
Mean single sequence MFE | -9.66 |
Consensus MFE | -8.82 |
Energy contribution | -8.58 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.09 |
Mean z-score | -1.27 |
Structure conservation index | 0.91 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.827447 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7103067 95 - 22224390 AGAUGCUACGUGCUGCACACGGUCCACAUGACAUCUGCAUACAUCUCCCUCAUAUCCUCUUUCAUUUCUCCUAUUCGUUUUUUUUUUUUUUUUCA ..((((..((((.....))))(((.....)))....))))....................................................... ( -9.30) >DroPse_CAF1 49440 86 - 1 CGAUGCUACGUGAUGCACAUGGUCCACAUGACAUCUGCAUA--UUUCUCUUAUAUCUUCC----UCUCUUCUGUCU---UUUUUUUCGCUUUCUA ..((((.....((((..((((.....)))).)))).)))).--.................----............---................ ( -10.20) >DroSec_CAF1 93977 85 - 1 AGAUGCUACGUGCUGCACACGGUCCACAUGACAUCUGCAUACAUCUCCCUCAUAUCCUCUUUCAUUUCUCCUAUUC----------UUUUUUUCA ..((((..((((.....))))(((.....)))....))))....................................----------......... ( -9.30) >DroSim_CAF1 94029 85 - 1 AGAUGCUACGUGCUGCACACGGUCCACAUGACAUCUGCAUACAUCUCCCUCAUAUCCUCUUUCAUUUCUCCUAUUC----------UUUUUUUCA ..((((..((((.....))))(((.....)))....))))....................................----------......... ( -9.30) >DroPer_CAF1 49419 86 - 1 CGAUGCUACGUGAUGCACAUGGUCCACAUGACAUCUGCAUA--UUUCUCUUAUAUCUUCC----UCUCUUCUGUCU---UUUUUUUCGCUUUCUA ..((((.....((((..((((.....)))).)))).)))).--.................----............---................ ( -10.20) >consensus AGAUGCUACGUGCUGCACACGGUCCACAUGACAUCUGCAUACAUCUCCCUCAUAUCCUCUUUCAUUUCUCCUAUUC___UUUUUUUUUUUUUUCA ..((((..((((.....))))(((.....)))....))))....................................................... ( -8.82 = -8.58 + -0.24)
Location | 7,103,099 – 7,103,201 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.99 |
Mean single sequence MFE | -31.20 |
Consensus MFE | -23.89 |
Energy contribution | -24.08 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -2.36 |
Structure conservation index | 0.77 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.642125 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7103099 102 - 22224390 CAGGACUCGCAGGACUCGCCAAGGUGG-UCCACGGUCCACAGAUGCUACGUGCUGCACACGGUCCACAUGACAUC------UGCAUACAUCUCCCUCAUAUCCUCUUUC----------- ..((((.((..((((.(((....))))-))).)))))).((((((.((.((((((....)))..))).)).))))------))..........................----------- ( -28.20) >DroSec_CAF1 93999 102 - 1 CAGGACUCGCAGGACUCGCCAAGGUGG-UCCACGGUCCACAGAUGCUACGUGCUGCACACGGUCCACAUGACAUC------UGCAUACAUCUCCCUCAUAUCCUCUUUC----------- ..((((.((..((((.(((....))))-))).)))))).((((((.((.((((((....)))..))).)).))))------))..........................----------- ( -28.20) >DroSim_CAF1 94051 102 - 1 CAGGACUCGCAGGACUCGCCAAGGUGG-UCCACGGUCCACAGAUGCUACGUGCUGCACACGGUCCACAUGACAUC------UGCAUACAUCUCCCUCAUAUCCUCUUUC----------- ..((((.((..((((.(((....))))-))).)))))).((((((.((.((((((....)))..))).)).))))------))..........................----------- ( -28.20) >DroEre_CAF1 96133 113 - 1 CAGGACUCGCAGGACUCGCCAAGGUGG-UCCACGGUCCACAGAUGCUACGUGCUGCACACGGUCCACAUGACAUC------UGCAUACAUCUUCCUCACAUCCUCCUCCAUUUCUCCACA ..((((.((..((((.(((....))))-))).)))))).((((((.((.((((((....)))..))).)).))))------))..................................... ( -28.20) >DroYak_CAF1 96659 115 - 1 CAGGACUCGCAGGACUCGCCAAGGUGG-UCCACGGUCCACAGAUGCUACGUGCUGCACACGGUCCACAUGACAUCUGCAUCUGCAUACAUCUUCCUCAUAUCCU--UACAU-UCUCUAC- ..((((.((..((((.(((....))))-))).)))))).(((((((..((((.....))))(((.....)))....))))))).....................--.....-.......- ( -34.40) >DroAna_CAF1 143370 107 - 1 AAGGAUACGAAGGACUCGCCAAGGUGGGCCCACCGUCCACAGAUGCUACGUGAUGCACACGGUCCACAUGACAUC------UGCAUA--UUUCCCUCAUAUCCUUCG-UAU-CCUUU--- ((((((((((((((.........((((((.....))))))..((((..((((.....))))(((.....)))...------.)))).--...........)))))))-)))-)))).--- ( -40.00) >consensus CAGGACUCGCAGGACUCGCCAAGGUGG_UCCACGGUCCACAGAUGCUACGUGCUGCACACGGUCCACAUGACAUC______UGCAUACAUCUCCCUCAUAUCCUCUUUC___________ ..((((.((..(((.((((....)))).))).))))))....((((..((((.....))))(((.....)))..........)))).................................. (-23.89 = -24.08 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:07 2006